View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_4 (Length: 847)
Name: NF20620_low_4
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 733
Target Start/End: Original strand, 493964 - 494658
Alignment:
| Q |
18 |
agaagcgcgttgcaactttcacttttctgctgttttttgaagctaacgcgactattgatataagctccgtctcagtggttgggtacataacctcgctagc |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
493964 |
agaagcgcgttgcaactttcacttttctgttgttttttgaagctaacgcgactattgatataagctccgcctcagtggttgggtacataacctcgctagc |
494063 |
T |
|
| Q |
118 |
tctgcaaatgcttcgatcgggaaacacgccatttgaattggtgatggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaa |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494064 |
tctgcaaatgcttcgatcggggaacacgccatttgaattggtgatggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaa |
494163 |
T |
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| Q |
218 |
attactccatatattataaataggaagataaaaatagtggacttgaattctagttttctcatgatattagagaatatcattaacattgtctagctatagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494164 |
attactccatatattataaataggaagataaaaatagtggacttgaattctagttttctcatgatattagagaatatcattaacattgtctagctatagt |
494263 |
T |
|
| Q |
318 |
tgatatt--ttatctatctctatgatcttctatgtgctatttataaaacgaatgtaatattgtggtccatgtattgcttcaagaaaataatattctaaag |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||| |
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| T |
494264 |
tgatatttcttatctatctctatgatcttctatgtgctatttataaaacgaatgtaatattgttgtccatgtcttgcttaaagaaaatagtattctaaag |
494363 |
T |
|
| Q |
416 |
taccgtgtttttgttagcttagtgattgataatggctaagcttaagatcaagggtgagctatagccctagctcaattttattag-------atttatata |
508 |
Q |
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| T |
494364 |
----------------------tgattgataatggctaa------gatcaagggtcaactatag-cctacctcaattttattagattttagatttatata |
494434 |
T |
|
| Q |
509 |
tacatacatgcataactcgagcattgacttctaataataaatattgagtcatgggtaacatggtgactagaaaagcaaaaataataacataggtattgat |
608 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
494435 |
tacatacatgcataaatcgagcattgacttctaataataaacatcgagtcatgagtaacatgaggactagaaaagcaaaaataataacata-gtattgat |
494533 |
T |
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| Q |
609 |
taatgacaaatttatttttatccaactcagctgttcatgataccatatcatcaaaaacaagtggactgaaaaaatattagtattacatatcataatccat |
708 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
494534 |
taatgacaaatttgtttttatccaactcagctgttcatgataccatatcatcaaaaacaagtggactgaaaaaatattagaattacatatcataatccat |
494633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 759 - 844
Target Start/End: Complemental strand, 495195 - 495110
Alignment:
| Q |
759 |
agaagccaagggaaaagaaatcaatctctttaatctaggccttttgacaggcagactacaccgaaaacacaatattttctctgttc |
844 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
495195 |
agaagccaagggaaaagaaatcaatctctttaatctaggccttttgacaggcagactacactgattacacattattttctctgttc |
495110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 49013592 - 49013347
Alignment:
| Q |
18 |
agaagcgcgttgcaactttcacttttctgctgttttttgaagctaacgcgactattgatataagctccgtctcagtggttgggtacataacctcgctagc |
117 |
Q |
| |
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|||||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||| | |||||| |||| |||||||||||| |
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| T |
49013592 |
agaagcgcgtcgcaactttcatttttctgttgttttctgaagctaacgcgactattgatataagctctacctctgaggttggatacacaacctcgctagc |
49013493 |
T |
|
| Q |
118 |
tctgcaaatgcttcgatcgggaaacacgccatttgaattggtgatggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaa |
217 |
Q |
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| ||||||||||| | || || ||| ||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
49013492 |
tttgcaaatgctttggtcagggaacgcgccattggaattcgtgatggtgcagtttgtgttatttgatgaacatttaattggatcttctggaggagttgaa |
49013393 |
T |
|
| Q |
218 |
attactccatatattataaataggaagataaaaatagtggacttga |
263 |
Q |
| |
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|| |||||||| |||| || || |||||||| | |||| |||||| |
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| T |
49013392 |
atcactccatagattacaaggagaaagataaagagagtgaacttga |
49013347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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