View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_44 (Length: 368)
Name: NF20620_low_44
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 39784320 - 39784688
Alignment:
| Q |
1 |
gaataagaatataatggaacacgtagagtaaatgtagataaaaatttgatgtgatttgtaagtagatttataaacactctt--------gaagtctatcc |
92 |
Q |
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| T |
39784320 |
gaataagaatataatggaacacgtagagtaaatgtagataaaaatttgatgtgatttgtaaatagatttataaacactctttgaattttgaagtctattc |
39784419 |
T |
|
| Q |
93 |
ccattctagtaaatttccagagtccgtctcaaataaacttttatgctataaaaaatgtatataaaaaagttcataagtgatcagttgctcaaacacacaa |
192 |
Q |
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| T |
39784420 |
ccattccagtaaatttctagagtccgtctcaaataaacttttatgctataaaaaatgtatataaaaaagttcataagtgatcggttgctcaaacacacaa |
39784519 |
T |
|
| Q |
193 |
gttaagcctaattaaccgaataatgttattttatagtaatacagttaccaattggttataacaattagctagaaattaggtacatattaataagatccaa |
292 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39784520 |
gtaaagcctaattaaccgaataatgttattttatagtaatacagttaccaattggttataacaattagctagaaattaggtacatattaataagacccaa |
39784619 |
T |
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| Q |
293 |
atcgtnnnnnnnngggtgacttaatttgttggcaatgatcaactgttgcatttgaggtttctgatgatg |
361 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
39784620 |
atcgtaaaaaaaagggtgacttaatttgttggcaatgatcagctgttgcgtttgaggtttctcatgatg |
39784688 |
T |
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