View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_46 (Length: 351)
Name: NF20620_low_46
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 32708346 - 32708676
Alignment:
| Q |
21 |
tagacaaacaaagataaccaacaacacaccacaactttctaaatatattcgagaaaatgggcgtttgtaaaccctaaataaatttttatggatttctagt |
120 |
Q |
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| T |
32708346 |
tagacaaacaaagataaccagcaacacaccacaactttctaaatatattcgagaaaatgggcgtttgtaaaccctaaataattttttatggatttctagt |
32708445 |
T |
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| Q |
121 |
caatactacggtgacattgacaaatttagttttttccttggacatccgatcaactaagatttcttgatagcgatcaaagagctcatcaataatagactct |
220 |
Q |
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| T |
32708446 |
caatactacggtgacattgacaaatttagttttttccttggacatccgatcaactaagatttcttgatagcgatcaaagagctcatcaataatagactct |
32708545 |
T |
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| Q |
221 |
ccaaagtggctaactagcaaaggttcagaaacggctctcatgcactgcatcacattgtatgcaccatcgccgagtgattcagacatttgagactcacaag |
320 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32708546 |
ccaaagtgtctaactagcaaaggttcagaaacggctctcatgcactgcatgacattgtatgcaccatcgccaagtgattcagacatttgagactcacaag |
32708645 |
T |
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| Q |
321 |
caagagcattccattgatcaagagcattcca |
351 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32708646 |
caagagcattccattgatcaagagcattcca |
32708676 |
T |
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