View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20620_low_47 (Length: 346)
Name: NF20620_low_47
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 52947049 - 52946718
Alignment:
| Q |
1 |
tctctattattcacttcatctctttcattttgtttcatttagcatctacacaaattgagaagcagagtcagagagatatgggtgcttgttattcttgcaa |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52947049 |
tctctattattcactacacctctttcattttgtttcatttagcatctacacaaattgagaagcagagtcagagagatatgggtgcttgttattcttgcaa |
52946950 |
T |
|
| Q |
101 |
cacatcctctatattaaaaaataatatcagagtcattcatctgaatggttttgtagaagattttgatcaaccaatttcagcaagccaagttattggaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52946949 |
cacatcctctatattaaaaaataatatcagagtcattcatctgaatggttttgtagaagattttgatcaaccaatttcagcaagccaagttattggaaat |
52946850 |
T |
|
| Q |
201 |
ccaccaaactactttgtctgtacctcaattcagcttctttcttcatcctacaatccattgaaaggagatagtcaactccaacctggtcaactatatttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52946849 |
ccaccaaactactttgtctgtacctcaattcagcttctttcttcatcctacaatccattgaaaggagatagtcaactccaacctggtcaactatatttca |
52946750 |
T |
|
| Q |
301 |
tgctaccatactcaatacttgaagatggtttt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52946749 |
tgctaccatactcaatacttgaagatggtttt |
52946718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University