View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_48 (Length: 330)
Name: NF20620_low_48
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 142 - 312
Target Start/End: Complemental strand, 47904084 - 47903917
Alignment:
| Q |
142 |
caatttcacatgttattacaatgttgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacata |
241 |
Q |
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| T |
47904084 |
caatttcacatgttattacaatgttgtt---attttaacattgatatataaataattgtatgtgcatgaaggaacatggttcacttcgagtgcacacata |
47903988 |
T |
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| Q |
242 |
gtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggattggagg |
312 |
Q |
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| T |
47903987 |
gtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggatcggagg |
47903917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 47904210 - 47904122
Alignment:
| Q |
13 |
cagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcataaaacgaacaggtttgtatcttatgtgaccaaaaccata |
101 |
Q |
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| T |
47904210 |
cagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcatgaaacgaacaggtttgtatcttatgtgaccaaaaccata |
47904122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 308
Target Start/End: Complemental strand, 47925164 - 47925063
Alignment:
| Q |
207 |
atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
306 |
Q |
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| T |
47925164 |
atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggat |
47925065 |
T |
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| Q |
307 |
tg |
308 |
Q |
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|| |
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| T |
47925064 |
tg |
47925063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 47919948 - 47919833
Alignment:
| Q |
193 |
ataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgct |
292 |
Q |
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|||||| ||||||||||||||| ||| | | ||| ||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||| |
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| T |
47919948 |
ataattttatgtgcatgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgca |
47919849 |
T |
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| Q |
293 |
cagttgggatggattg |
308 |
Q |
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| T |
47919848 |
caattgggctggattg |
47919833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 308
Target Start/End: Complemental strand, 47911120 - 47911019
Alignment:
| Q |
207 |
atgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
306 |
Q |
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| T |
47911120 |
atgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttggat |
47911021 |
T |
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| Q |
307 |
tg |
308 |
Q |
| |
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|| |
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| T |
47911020 |
tg |
47911019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 47920107 - 47920043
Alignment:
| Q |
13 |
cagagtagtttttccatagaagatggaaagtatgatgatgatggtcgcataaaacgaacaggttt |
77 |
Q |
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|||||||| || |||||| | |||| ||| |||||||||||||||| |||||||||||||||||| |
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| T |
47920107 |
cagagtagcttctccatacatgatgaaaaatatgatgatgatggtctcataaaacgaacaggttt |
47920043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 47925293 - 47925253
Alignment:
| Q |
44 |
atgatgatgatggtcgcataaaacgaacaggtttgtatctt |
84 |
Q |
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| T |
47925293 |
atgatgatgatggtcgcgtaaaacgaacaggtttgtatctt |
47925253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 47911239 - 47911205
Alignment:
| Q |
43 |
tatgatgatgatggtcgcataaaacgaacaggttt |
77 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
47911239 |
tatgatgatgatggtcacataaaacgaacaggttt |
47911205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 42996777 - 42996828
Alignment:
| Q |
44 |
atgatgatgatggtcgcataaaacgaacaggtttgtatcttatgtgaccaaa |
95 |
Q |
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| T |
42996777 |
atgatgatgatggtcgcataaatcgaacaggtctgtatcttgtgtgaccaaa |
42996828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 42996888 - 42996991
Alignment:
| Q |
166 |
tgttgttattttaacattgatatataaataattgtatgtgcatgaaggaacattgttcacttcgagtgcacacatagtgacggctgtaatagggtctgga |
265 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||||||||||| ||||| | | | ||||| |||||| | || ||||||||| |||||| |
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| T |
42996888 |
tgtttttattttaacattgata----aataattgtatgagcatgaaggaacgttgttaattgtgggtgcaaccatagtaatggttgtaataggatctgga |
42996983 |
T |
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| Q |
266 |
gtgttgtc |
273 |
Q |
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|||||||| |
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| T |
42996984 |
gtgttgtc |
42996991 |
T |
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