View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_49 (Length: 326)
Name: NF20620_low_49
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 49808228 - 49807928
Alignment:
| Q |
10 |
ttaaaaaatgagatcacttagaacttacattatgttaactacacacgacaataagaaaacagtagtaaatagaaaaaatctaggttttcaaagtcataac |
109 |
Q |
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|||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49808228 |
ttaaaaaatgagatcacttagaccttccattttgttaactacacacgacaataagaaaacagtagtaaatagaaaaaatctaggttttcaaagtcataac |
49808129 |
T |
|
| Q |
110 |
ttatgacttaaaaattggtnnnnnnntcaacagcattcgcagcacgaaaacaataaattgaagtaaaaaatgagtaagttaagcatagagaaatagatta |
209 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49808128 |
ttatgact-aaaaattggtaaaaaaatcaacagcattcccagcacgaaaacaataaattgaagtaaaaaatgagtaagttaagcatagagaaatagatta |
49808030 |
T |
|
| Q |
210 |
tagatctaattaagggtaataagaaataccgaaattgcggccaacaatacaatgccaggtaggaccatgcctcttgtcaaactccttctttatagtctct |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49808029 |
tagatctaattaaggggaataagaaataccgaaattgcggccaacaatacaatgccaggtaggaccatgcctcttgtcaaactccttctttatagtctct |
49807930 |
T |
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| Q |
310 |
gc |
311 |
Q |
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|| |
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| T |
49807929 |
gc |
49807928 |
T |
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