View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_5 (Length: 804)
Name: NF20620_low_5
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_5 |
 | |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 110 - 786
Target Start/End: Original strand, 39181732 - 39182403
Alignment:
| Q |
110 |
atttgggtcaatgcttaatgatgtcctttcatttttgggtttacatatctaaaaattgagcatgcattactagagacctgggacaggacgtgaatctttc |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39181732 |
atttgggtcaatgcttaatgatgtcctttcatttttgggtttacatatctaaaaattgagcatgcattactagagacctgggacaggacgtgaatcttcc |
39181831 |
T |
|
| Q |
210 |
tcgttgtgatatttgatacacaactataatttgctgtcaagcaacacaggtagaaaatttacaaatcaagttttctaatccttacttattgcaagtagac |
309 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39181832 |
tcgttgtgatatttgacacacaactataatttgcagtcaagcaacacaggtagaaaatttacaaatcaagttttctaatccttacttattgcaagtacac |
39181931 |
T |
|
| Q |
310 |
taaattttaagcaaactaaaagaatatttcnnnnnnntgttctttttagggtcatgactcatgacattaacaccatgcatccagtcatgttggccatgtc |
409 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39181932 |
taaattttaagcaaactaaaagaatatttcaaaaaac-gttctttttagggtcatgactcatgacattaacaccat----ccagtcatgttggccatgtc |
39182026 |
T |
|
| Q |
410 |
atagcacaagatattacaagataaaaagaaccaaatgaagacagaagatagaaatccagaaacattcactaagcataaaatccaaacatcaaaacagcac |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182027 |
atagcacaagatattacaagataaaaagaaccaaatgaagacagaagatagaaattcagaaacattcactaagcataaaatccaaacatcaaaacagcac |
39182126 |
T |
|
| Q |
510 |
cattttatgtctcttaagcaatggtgagatatacacatcatgtcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcaca |
609 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182127 |
cattttaagtctcttaagcaatggtgagatatacacatcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcaca |
39182226 |
T |
|
| Q |
610 |
tgtaaacccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgccagtagtttttgccagtggcatgcggtcacatgatca |
709 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
39182227 |
tgtaaatccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgccagtagtgtttgccagtggcatgcgttcacatgatca |
39182326 |
T |
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| Q |
710 |
gatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgtatcc |
786 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |
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| T |
39182327 |
gatcagtagtaatattcaacttcgccggctgcaaaaaaaaaaaaaaaaatataggatgcattaaaacttgtgtatcc |
39182403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 387 - 782
Target Start/End: Complemental strand, 2103705 - 2103302
Alignment:
| Q |
387 |
catccagtcatgttggccatgtcatagcacaagatattacaagataaaaagaaccaaatgaagacagaagatagaaatccagaaacattcac-------- |
478 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
2103705 |
catccaatcatgttcgccatggcatagcacaagatattatataatgaaaagaaccaaatgaagacagaagataagaattcagaaacattcacatggcgtc |
2103606 |
T |
|
| Q |
479 |
taagcataaaatccaaacatcaaaacagcaccattttatgtctcttaagcaatggtgagatataca----catcatgtcatgttcaaattgacaaaattg |
574 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
2103605 |
taagcataaaatccaaacatcaaaacaacaccattttaagcctcttaagcaatggtgggatatacatacacatcatggcatgttcaaattgacaaaattg |
2103506 |
T |
|
| Q |
575 |
taaacaacatttgacttttgacatgcagtgtcacatgtaaacccccctaaatgctgaactagtaggcacaacctaaacaggaaaattaacatagttgcca |
674 |
Q |
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||||||||||| ||| ||||||||| |||||| |||||| | |||||||||||| ||||||||||||||| ||||| | ||||| |||||||||||||| |
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| T |
2103505 |
taaacaacattcgacctttgacatggagtgtctcatgtacatccccctaaatgcgaaactagtaggcacaaactaaataagaaaagtaacatagttgcca |
2103406 |
T |
|
| Q |
675 |
gtagtttttgccagtggcatgcggtcacatgatcagatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaa |
774 |
Q |
| |
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|| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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| T |
2103405 |
ata-attttgacagtggcatgctgtcacatgatcttatcagtagtaatattcaacttcgccggctgca--aaaagaaaa-aaaatatagaatgcattaaa |
2103310 |
T |
|
| Q |
775 |
acttgtgt |
782 |
Q |
| |
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|||||||| |
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| T |
2103309 |
acttgtgt |
2103302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 547 - 612
Target Start/End: Complemental strand, 2049432 - 2049367
Alignment:
| Q |
547 |
tcatgtcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtcacatgt |
612 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
2049432 |
tcatggcatgttcaaaataacaaaattgtaaacaacatttgacctttgatattcagtgtcacatgt |
2049367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 607
Target Start/End: Complemental strand, 2055531 - 2055472
Alignment:
| Q |
547 |
tcatgtcatgttcaaattgacaaaattgtaaacaacatttgacttttgacatgcagtgtca |
607 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
2055531 |
tcatggcatgttcaaatt-acaaaattgtaaacaacaattgacctttgacatgcattgtca |
2055472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 708
Target Start/End: Complemental strand, 2099517 - 2099470
Alignment:
| Q |
661 |
taacatagttgccagtagtttttgccagtggcatgcggtcacatgatc |
708 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||| |||||| |
|
|
| T |
2099517 |
taacatagttgccaatagtttttgacagtggcatgctgtcagatgatc |
2099470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 601
Target Start/End: Complemental strand, 2042792 - 2042750
Alignment:
| Q |
559 |
caaattgacaaaattgtaaacaacatttgacttttgacatgca |
601 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| |
|
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| T |
2042792 |
caaattgatgaaattgtaaacaacatttgacctttgacatgca |
2042750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 706
Target Start/End: Complemental strand, 2089232 - 2089187
Alignment:
| Q |
661 |
taacatagttgccagtagtttttgccagtggcatgcggtcacatga |
706 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||| |||| |
|
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| T |
2089232 |
taacatagttgccaatagtttttgacagtggcatgctgtcatatga |
2089187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 177 - 282
Alignment:
| Q |
5 |
tggagaacagagggtgtgagagaggagattgcgttttagggtttcaaagattgagggtgagaggaaatgaaatagattgagtgagagatgaagaatttgt |
104 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||| |||| |
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|
| T |
177 |
tggagaacggagggtgtgagaaaggaaattgctttttagggtttcaaagattgagggtgagaggaaatgaaagagatttagggtgagatgaagattttga |
276 |
T |
|
| Q |
105 |
gattga |
110 |
Q |
| |
|
|||||| |
|
|
| T |
277 |
gattga |
282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 84358 - 84253
Alignment:
| Q |
5 |
tggagaacagagggtgtgagagaggagattgcgttttagggtttcaaagattgagggtgagaggaaatgaaatagattgagtgagagatgaagaatttgt |
104 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||| |||| |
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| T |
84358 |
tggagaacggagggtgtgagaaaggaaattgctttttagggtttcaaagattgagggtgagaggaaatgaaagagatttagggtgagatgaagattttga |
84259 |
T |
|
| Q |
105 |
gattga |
110 |
Q |
| |
|
|||||| |
|
|
| T |
84258 |
gattga |
84253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 7206281 - 7206386
Alignment:
| Q |
5 |
tggagaacagagggtgtgagagaggagattgcgttttagggtttcaaagattgagggtgagaggaaatgaaatagattgagtgagagatgaagaatttgt |
104 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||| |||| |
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|
| T |
7206281 |
tggagaacggagggtgtgagaaaggaaattgctttttagggtttcaaagattgagggtgagaggaaatgaaagagatttagggtgagatgaagattttga |
7206380 |
T |
|
| Q |
105 |
gattga |
110 |
Q |
| |
|
|||||| |
|
|
| T |
7206381 |
gattga |
7206386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 48009238 - 48009158
Alignment:
| Q |
5 |
tggagaacagagggtgtgagagaggagattgcgttttagggtttcaaagattgagggtgagaggaaatgaaatagattgag |
85 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||| | |||||| |
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|
| T |
48009238 |
tggagaacgaagggtgtgagagaggagattgctttttagggtttcatagattaagggtgaaaggaaatgaaagatattgag |
48009158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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