View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_51 (Length: 319)
Name: NF20620_low_51
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_51 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 10244294 - 10244124
Alignment:
| Q |
141 |
ctctcccaaaccgtttcacaagtgtgtatgttagtagataaatgcaaagaagtaaatctaaatagacataaagccaagtacccaaattgatcatgactta |
240 |
Q |
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| T |
10244294 |
ctctcccaaaccgtttcacaagtgtgtatgttagtagataaatgcaaataagtaaatccaaatagacataaagccaagtacccaaattgatcatgacttg |
10244195 |
T |
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| Q |
241 |
attaaaggaagcaaatctaatt-aatgaaccaatctaattaaaatagctacacacgtactctctccagtca |
310 |
Q |
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| T |
10244194 |
attaaaggaagcaaatctaattaaatgaaccaatctaattaaaatagctatacatttactctctcctgtca |
10244124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 10244388 - 10244284
Alignment:
| Q |
19 |
atggagataatattttttgttaaaacaatagggtgaaagcatcaagtgatagctatgacttcacaactaagtttaaacaggttgtttcaaaaaactctcc |
118 |
Q |
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| T |
10244388 |
atggagataatattttttgttaaaacaatagggtgaaagcatcaagtgatagctataacttcccaactaagtttaaataggttgtttaaaaaaactctcc |
10244289 |
T |
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| Q |
119 |
caaac |
123 |
Q |
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| T |
10244288 |
caaac |
10244284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 27857446 - 27857487
Alignment:
| Q |
141 |
ctctcccaaaccgtttcacaagtgtgtatgttagtagataaa |
182 |
Q |
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| T |
27857446 |
ctctcccaaacagtttcacaagtgtctatgtcagtagataaa |
27857487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 41848681 - 41848632
Alignment:
| Q |
158 |
acaagtgtgtatgttagtagataaatgcaaagaagtaaatctaaatagac |
207 |
Q |
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| T |
41848681 |
acaagtgtttatgttagtagataaactcaaataagtcaatctaaatagac |
41848632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 5157160 - 5157225
Alignment:
| Q |
141 |
ctctcccaaaccgtttcacaagtgtgtatgttagtagataaatgcaaagaagtaaatctaaataga |
206 |
Q |
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| T |
5157160 |
ctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaataga |
5157225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 9760 - 9696
Alignment:
| Q |
141 |
ctctcccaaaccgtttcacaagtgtgtatgttagtagataaatgcaaagaagtaaatctaaatag |
205 |
Q |
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| T |
9760 |
ctctcccaaacagtctcacaagtatttatgttagtagataaactcaaataaatcaatctaaatag |
9696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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