View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_52 (Length: 315)
Name: NF20620_low_52
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 44005780 - 44006062
Alignment:
| Q |
15 |
tattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatccttata |
114 |
Q |
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| T |
44005780 |
tattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatccttata |
44005879 |
T |
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| Q |
115 |
attaaattagtattatgcaaagtctagaggccagaagaggnnnnnnnggaattcctagtgtcatctgcatggctatgttcttacatatccattgtcttta |
214 |
Q |
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| T |
44005880 |
attaaattagtattatgcaaagtctagaggccagaagaggaaaaaaaggaattcctagtgtcatctgcatggctatgttcttacatatccattgtcttta |
44005979 |
T |
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| Q |
215 |
cttttgttggtattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaac |
297 |
Q |
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| T |
44005980 |
cttttgttgatattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaac |
44006062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 44009759 - 44009852
Alignment:
| Q |
17 |
ttatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtt-tggacaaaatctatcaaaagaatgtaatcc |
109 |
Q |
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| T |
44009759 |
ttatagtaatattaatatatacaatcttctcataggtagatggaacaaaaccaatgctgtgttgtggacaaaatctatcaaaagaatgtaatcc |
44009852 |
T |
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