View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_56 (Length: 296)
Name: NF20620_low_56
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_56 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 32708763 - 32709054
Alignment:
| Q |
1 |
attgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacagaaaaaaggaatttcatatatattaatatcttggtgaattcgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |
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| T |
32708763 |
attgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacataaaaaaggaatttcatat----tagtatcttggtgaattcgat |
32708858 |
T |
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| Q |
101 |
ctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccat |
200 |
Q |
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| T |
32708859 |
ctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccat |
32708958 |
T |
|
| Q |
201 |
aagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcagctacttcctt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32708959 |
aagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctt |
32709054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 32627340 - 32627462
Alignment:
| Q |
163 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg |
262 |
Q |
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||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32627340 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg |
32627439 |
T |
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| Q |
263 |
ttagaatcatgcgaccaccttca |
285 |
Q |
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||| |||||||| ||| |||||| |
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| T |
32627440 |
ttataatcatgcaacccccttca |
32627462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 32703490 - 32703557
Alignment:
| Q |
163 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
230 |
Q |
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| T |
32703490 |
tttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgct |
32703557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 27736240 - 27736347
Alignment:
| Q |
165 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgtt |
264 |
Q |
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| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
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| Q |
265 |
agaatcat |
272 |
Q |
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|||||||| |
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| T |
27736340 |
agaatcat |
27736347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 5810967 - 5811087
Alignment:
| Q |
165 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct--atacttc-ttgtcactttttcttcctaaaaat |
261 |
Q |
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||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| || || ||| |||||| |||||||||| |
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| T |
5810967 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgt---tttttcgtcctaaaaat |
5811063 |
T |
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| Q |
262 |
gttagaatcatgcgaccaccttca |
285 |
Q |
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| T |
5811064 |
gttagaatcatgtgaccaccttca |
5811087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 8030641 - 8030552
Alignment:
| Q |
165 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcc |
254 |
Q |
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||||| ||||||||| |||||||| || | ||| | ||| |||||||| ||||||||||| |||||||| || | |||||||||||||| |
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| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcc |
8030552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 21943087 - 21943132
Alignment:
| Q |
165 |
tacctgcaagaccatatcattaagagctatagccataagttcccaa |
210 |
Q |
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| T |
21943087 |
tacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 20116800 - 20116764
Alignment:
| Q |
175 |
accatatcattaagagctatagccataagttcccaaa |
211 |
Q |
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| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaa |
20116764 |
T |
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