View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_62 (Length: 277)
Name: NF20620_low_62
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 29648964 - 29649225
Alignment:
| Q |
1 |
caatatggtgcaatgaaaacccttttacttacctaagcacagggtagacagtttccatgtagagtgaattttggtgtcttttgtacagtccagtaagatg |
100 |
Q |
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| T |
29648964 |
caatatggtgcaacgaaaacccttttacttacctaagcacagggtagacagtttccatgtagagtgaattttggtgtcttttgtacagtccagtaagatg |
29649063 |
T |
|
| Q |
101 |
agccattaaaacatatgcaccaaaaagtgcccaaaagcatccagtaaatagtcctgaatttatttggaagattcagttaattttatgagtaacttgctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649064 |
agccattaaaacatatgcaccaaaaagtgcccaaaagcatccagtaaatagtcctgaatttatttggaagattcagttaattttatgagtaacttgctaa |
29649163 |
T |
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| Q |
201 |
ggaatttacactcatatcaaat-nnnnnnntcaaacatttttcatatataatgagttcttat |
261 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29649164 |
ggaatttacactcatatcaaataaaaaaaatcaaacatttttcatatataatgagttcttat |
29649225 |
T |
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