View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_63 (Length: 275)
Name: NF20620_low_63
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_63 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 24225220 - 24225018
Alignment:
| Q |
63 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgtcactagccaaaatctcacaaag |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225220 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgtcactagccaaaatctcacaaag |
24225121 |
T |
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| Q |
163 |
aagttttctatttttgaaaaaagtgaattggattaataattttcctaattctgttgctaatttttaatttatttaggttgtggttagtattataattcaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24225120 |
aagttttctatttttgaaaaaagtgaattggattaataattttcctaattctgttgctaatttttaatttttttaggttgtggttagtattataattcaa |
24225021 |
T |
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| Q |
263 |
tct |
265 |
Q |
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||| |
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| T |
24225020 |
tct |
24225018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 53046318 - 53046207
Alignment:
| Q |
64 |
aaattctattgatgagtttgattctggtggtttaggaagattttagggttt-----ttcttttgatttg-gggaaaactgtgtcactagccaaaatctca |
157 |
Q |
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||||||||||||||| ||||||||| |||||||||| ||||||||||||| |||||||| |||| ||| ||| ||||| ||| |||||||||||| |
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| T |
53046318 |
aaattctattgatgaatttgattcttgtggtttaggg-gattttagggtttatcttttcttttggtttgaggggaaattgtgttactggccaaaatctca |
53046220 |
T |
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| Q |
158 |
caaagaagttttc |
170 |
Q |
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|| |||||||||| |
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| T |
53046219 |
catagaagttttc |
53046207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 265
Target Start/End: Original strand, 2316 - 2518
Alignment:
| Q |
63 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgtcactagccaaaatctcacaaag |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2316 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgttactagccaaaatctcacaaag |
2415 |
T |
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| Q |
163 |
aagttttctatttttgaaaaaagtgaattggattaataattttcctaattctgttgctaatttttaatttatttaggttgtggttagtattataattcaa |
262 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2416 |
aagttttctattattgaaaaaagtgaattggattaataattttcctaattttgttgctaatttttaatttttttaggttgtggttagtattataattcaa |
2515 |
T |
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| Q |
263 |
tct |
265 |
Q |
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||| |
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| T |
2516 |
tct |
2518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 265
Target Start/End: Original strand, 16413604 - 16413806
Alignment:
| Q |
63 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgtcactagccaaaatctcacaaag |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16413604 |
aaaattctattgatgagtttgattctggtggtttaggaagattttagggtttttcttttgatttggggaaaactgtgttactagccaaaatctcacaaag |
16413703 |
T |
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| Q |
163 |
aagttttctatttttgaaaaaagtgaattggattaataattttcctaattctgttgctaatttttaatttatttaggttgtggttagtattataattcaa |
262 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16413704 |
aagttttctattattgaaaaaagtgaattggattaataattttcctaattttgttgctaatttttaatttttttaggttgtggttagtattataattcaa |
16413803 |
T |
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| Q |
263 |
tct |
265 |
Q |
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||| |
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| T |
16413804 |
tct |
16413806 |
T |
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