View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_64 (Length: 273)
Name: NF20620_low_64
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 327378 - 327613
Alignment:
| Q |
18 |
ggtatgatggaaaagatgttgttattcaaaatttgcgccaatcttgcttctttaaagttgcaaatgaaagtggtaagccttggcaatggtgggactacgt |
117 |
Q |
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| T |
327378 |
ggtatgatggaaaagatgttgttattcaaaatttgcgccaatcttgcttctttaaagttgcaaatgaaagtggtaagccttggcaatggtgggactacgt |
327477 |
T |
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| Q |
118 |
tactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttggtaggttggatactttcctc |
217 |
Q |
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| T |
327478 |
tactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttggtaggttggatactttcctc |
327577 |
T |
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| Q |
218 |
tttcattgattgcacgcacgcactttgaccttgttctttg |
257 |
Q |
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| T |
327578 |
tttcatcgattgcac----gcactttgacctttttctttg |
327613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 27413308 - 27413122
Alignment:
| Q |
18 |
ggtatgatggaaaagatgttgttattcaaaatttgcgccaatcttgcttctttaaagttgcaaatgaaagtggtaagccttggcaatggtgggactacgt |
117 |
Q |
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| T |
27413308 |
ggtatgatggcaaagatgttgttgttcagaacttacgtcaagcttgcttctttaaagtggcgaatgaaagtggaagaccttggcaatggtgggattatgt |
27413209 |
T |
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| Q |
118 |
tactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttggtaggtt |
204 |
Q |
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| T |
27413208 |
gaccgacttttcaatccgttgccccatgaaagagaaaaaatacacagaagaatgctcggatgaagttattaaatctcttggtaggtt |
27413122 |
T |
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