View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_65 (Length: 267)
Name: NF20620_low_65
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_65 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 49808498 - 49808242
Alignment:
| Q |
11 |
cacagaatacaaagtggtcctataccactacgatcaaactcagttggtttgtgttcaattgtcatccctaagtaccccactcaagaattactcatctcca |
110 |
Q |
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| T |
49808498 |
cacagaatacaaagtggtcctatactactacgatcaaactcagttggtttgtgttcaattgtcatccctaagtaccccactcaagaattactcatctcca |
49808399 |
T |
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| Q |
111 |
ggtagaaataacttgaaaagtttacaactccaaaattcaatctataaaacacatacactgatacacatgcacgacactaacacatacactaataacaatt |
210 |
Q |
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| T |
49808398 |
ggtagaaataacttgaaaagtttacaactccaaaattcaatctataaaacacatacactgatacacatgcacgacactaacacatacactaataacaatt |
49808299 |
T |
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| Q |
211 |
ttaaaaaatggagtacatataatttgaaaagtcagacaccagacacgccttagaatt |
267 |
Q |
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| T |
49808298 |
ttaaaaaatggagtacatataatttgaaaagtcagacaccagacaagccttagaatt |
49808242 |
T |
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