View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_68 (Length: 262)
Name: NF20620_low_68
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 22553183 - 22552934
Alignment:
| Q |
1 |
tcatgaattttggccacatattttatgtatgatggtgttattgaacnnnnnnncactctctttttgtttaggctctttcaaatgggagatacaagagttg |
100 |
Q |
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| T |
22553183 |
tcatgaattttggccacatattttatgtatgatggtgttattgaactttttttcactctctttttgtttaggctctttcaaatgggagatacaagagttg |
22553084 |
T |
|
| Q |
101 |
tttacatagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaaggtgataaggtggtttgtccaccaagtgaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553083 |
tttacatagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaaggtgataaggtggtttgtccaccaagtgaattg |
22552984 |
T |
|
| Q |
201 |
gtgagtgatttgacaccaagaatctatcctgattttacatggcctttgct |
250 |
Q |
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| T |
22552983 |
gtgagtgatttgacaccaagaatctatcctgattttacatggcctatgct |
22552934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 46104099 - 46104234
Alignment:
| Q |
68 |
ttaggctctttcaaatgggagatacaagagttgtttacatagggcagtggtgaacaacaagacaacaagaaaatctctagctttctttttgtgtccaaaa |
167 |
Q |
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|||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||| | | | ||||| |||||||| |||||||||||||||||| | |
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| T |
46104099 |
ttaggcactttcaaatgggagatacaagagctgtttgcatagggcagtggtaaacagcgaaaagacaaggaaatctcttgctttctttttgtgtccatta |
46104198 |
T |
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| Q |
168 |
ggtgataaggtggtttgtccaccaagtgaattggtg |
203 |
Q |
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| T |
46104199 |
agtgataaagtggtaactccaccatgtgaattggtg |
46104234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 36445575 - 36445615
Alignment:
| Q |
78 |
tcaaatgggagatacaagagttgtttacatagggcagtggt |
118 |
Q |
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| T |
36445575 |
tcaaatggtagatacaagagttgcttgcatagggcagtggt |
36445615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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