View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_low_69 (Length: 260)

Name: NF20620_low_69
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_low_69
NF20620_low_69
[»] chr5 (8 HSPs)
chr5 (23-234)||(18359001-18359220)
chr5 (30-150)||(8300183-8300303)
chr5 (30-150)||(27767061-27767181)
chr5 (30-150)||(25857425-25857545)
chr5 (30-150)||(33385375-33385495)
chr5 (30-150)||(10776783-10776904)
chr5 (27-139)||(27795499-27795611)
chr5 (32-150)||(26072913-26073031)
[»] chr7 (4 HSPs)
chr7 (23-150)||(37254770-37254897)
chr7 (30-150)||(18532647-18532767)
chr7 (23-130)||(25619471-25619578)
chr7 (88-124)||(235464-235500)
[»] chr3 (9 HSPs)
chr3 (23-150)||(19890690-19890817)
chr3 (30-140)||(35214382-35214492)
chr3 (30-150)||(29523746-29523866)
chr3 (30-150)||(11203838-11203958)
chr3 (30-150)||(12342227-12342346)
chr3 (30-150)||(33496566-33496686)
chr3 (32-150)||(48570040-48570158)
chr3 (30-120)||(36801106-36801196)
chr3 (30-113)||(7031055-7031138)
[»] chr8 (9 HSPs)
chr8 (30-150)||(2170361-2170481)
chr8 (30-150)||(20824315-20824435)
chr8 (30-150)||(37434151-37434271)
chr8 (31-150)||(13200143-13200262)
chr8 (34-150)||(17699505-17699621)
chr8 (32-139)||(43270471-43270578)
chr8 (20-150)||(25090396-25090526)
chr8 (27-139)||(13879499-13879611)
chr8 (76-150)||(42177590-42177664)
[»] chr1 (4 HSPs)
chr1 (30-150)||(43388386-43388506)
chr1 (23-150)||(37191211-37191338)
chr1 (30-150)||(16917810-16917930)
chr1 (20-122)||(51993757-51993859)
[»] chr6 (10 HSPs)
chr6 (23-150)||(20883034-20883161)
chr6 (30-150)||(10577250-10577370)
chr6 (30-150)||(17606335-17606455)
chr6 (30-150)||(21630108-21630228)
chr6 (30-150)||(17573656-17573776)
chr6 (23-150)||(11462424-11462546)
chr6 (30-123)||(17579109-17579202)
chr6 (36-150)||(15958814-15958928)
chr6 (86-124)||(24767451-24767489)
chr6 (86-123)||(18651262-18651299)
[»] chr4 (8 HSPs)
chr4 (23-150)||(20002737-20002864)
chr4 (36-150)||(45472710-45472824)
chr4 (30-150)||(12697832-12697952)
chr4 (30-147)||(8361119-8361236)
chr4 (31-150)||(55725687-55725806)
chr4 (32-150)||(2822038-2822156)
chr4 (20-139)||(54483171-54483290)
chr4 (20-139)||(48312104-48312223)
[»] chr2 (6 HSPs)
chr2 (32-150)||(40176689-40176807)
chr2 (30-150)||(14439771-14439891)
chr2 (30-150)||(10999952-11000071)
chr2 (19-150)||(12645544-12645675)
chr2 (36-150)||(38604375-38604489)
chr2 (36-150)||(41207041-41207155)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 18359220 - 18359001
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18359220 caagttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaaggaacctgtttatgctagattaactccatattttga 18359121  T
Q  123 tgaacatgaggttgttcctctg--------atgtcatatacactacgaacaatatagcttctagtcaaaacttgttagatatagtggttgggaaaaattc 214  Q
    ||||||||||||||||||| ||        ||||||||||||| ||||||| |||| | |||| ||||||||||||||||||| ||||||| ||||||||    
T  18359120 tgaacatgaggttgttcctgtgatgtcaacatgtcatatacaccacgaacagtataacctctactcaaaacttgttagatataatggttggaaaaaattc 18359021  T
Q  215 acacacatcataatttaccc 234  Q
    ||||||||||||||||||||    
T  18359020 acacacatcataatttaccc 18359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 8300303 - 8300183
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||| ||||| |||||||  ||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  8300303 gatttagtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 8300204  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  8300203 gaggttgttcctgtgatgtca 8300183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 27767061 - 27767181
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    ||||| |||||||||||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  27767061 gattttgtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 27767160  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  27767161 gaggttgttcctgtgatgtca 27767181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 25857545 - 25857425
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||||||||     
T  25857545 gatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaa 25857446  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  25857445 gaggttgttcctgtgatgtca 25857425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 33385495 - 33385375
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||| ||||||||||||||| | |||||||||||||||||||||| ||    
T  33385495 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatgaatat 33385396  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  33385395 gaggttgttcctgtgatgtca 33385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 10776783 - 10776904
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatat-tttgatgaaca 128  Q
    |||||||||||||||||||| |||| ||  |||||| |||||||  |||||| ||| ||||||||||||||| | ||||||||||||| |||||||||||    
T  10776783 gatttagtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatatatttgatgaaca 10776882  T
Q  129 tgaggttgttcctctgatgtca 150  Q
    ||||||||||||| ||||||||    
T  10776883 tgaggttgttcctgtgatgtca 10776904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 27795499 - 27795611
Alignment:
Q  27 ttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaa 126  Q
    |||| ||||||||| |||||||| ||||||||||||||| ||| || |  |||||  | ||| |||||||| ||| ||| |||||||||| || ||||||    
T  27795499 ttggctttagtaggcaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctgtttgtgccagactaactccatacttggatgaa 27795598  T
Q  127 catgaggttgttc 139  Q
      |||||||||||    
T  27795599 tctgaggttgttc 27795611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 26072913 - 26073031
Alignment:
Q  32 tttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatga 131  Q
    |||||||||||| ||||| |||||||  |||||||||| |||    ||||  |||||||| | ||||||| | |||||||||| ||||||||| | |||     
T  26072913 tttagtaggtaatcgatccctcaacagtcgccaaacaaagatagggactttcaaaggaacatatttatgccaaattaactccaaattttgatgcaaatgg 26073012  T
Q  132 ggttgttcctctgatgtca 150  Q
    || |||||||  |||||||    
T  26073013 ggctgttcctgcgatgtca 26073031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 37254770 - 37254897
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  37254770 caagttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaagtaacctgtttatgccagattaactccatattttga 37254869  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    ||||||||||||||||||  ||||||||    
T  37254870 tgaacatgaggttgttcccgtgatgtca 37254897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 18532647 - 18532767
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  18532647 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgcgagattaactccatattttgatgaacat 18532746  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||| | ||||||||    
T  18532747 gaggttgttcatgtgatgtca 18532767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 25619471 - 25619578
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||| || || ||||||||||||||| |||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||    
T  25619471 caagttggatttagtaggtaatcgttccctcaacaaccgccaagcaaggatagaaacttttaaaggaacctgtttatgccatattaactccatattttga 25619570  T
Q  123 tgaacatg 130  Q
    ||||||||    
T  25619571 tgaacatg 25619578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 235500 - 235464
Alignment:
Q  88 gaacctgtttatgctagattaactccatattttgatg 124  Q
    |||||||||||||| | ||||||||||||||||||||    
T  235500 gaacctgtttatgccaaattaactccatattttgatg 235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 19890690 - 19890817
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||| ||||| |||||||||||| |  |||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19890690 caagttggatttagtaggtaatcgatccctcaacaaccgcaatgcaaggatggaaacttttaaaggaacctgtttatgccagattaactccatattttga 19890789  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    ||||||||||||| ||||| ||||||||    
T  19890790 tgaacatgaggttattcctgtgatgtca 19890817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 35214492 - 35214382
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  35214492 gatttagtaggcaaacgatccctcaacatccgccaaacaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacat 35214393  T
Q  130 gaggttgttcc 140  Q
    |||||||||||    
T  35214392 gaggttgttcc 35214382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 29523866 - 29523746
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  29523866 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 29523767  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  29523766 gaggttgttcctgtgatgtca 29523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 11203838 - 11203958
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||| ||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  11203838 gatttagtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 11203937  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  11203938 gaggttgttcctgtgatgtca 11203958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 12342346 - 12342227
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||||| ||||||||||||| | |||||||||||||||||||||||||    
T  12342346 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaag-aacctgtttatgccaaattaactccatattttgatgaacat 12342248  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  12342247 gaggttgttcctgtgatgtca 12342227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 33496566 - 33496686
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| ||| |||  |||||| ||||||||||||||||||| | ||||||||||||| |||||||||||    
T  33496566 gatttagtaggtaaacgatccctcaacagtcgccaagcaatgatagaaacttttaaaggaacctgtttatgccaaattaactccatatattgatgaacat 33496665  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  33496666 gaggttgttcctgtgatgtca 33496686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 48570158 - 48570040
Alignment:
Q  32 tttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatga 131  Q
    |||||||||||||||||| |||||||||||| || |||||| | |||||| || ||| | |||||| |||||||||||||||||||||||||||| ||||    
T  48570158 tttagtaggtaaacgatccctcaacaaccgctaagcaaggactgaaacttttagaggtatctgtttgtgctagattaactccatattttgatgaatatga 48570059  T
Q  132 ggttgttcctctgatgtca 150  Q
    |||||||| | ||||||||    
T  48570058 ggttgttcatgtgatgtca 48570040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 36801196 - 36801106
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatatttt 120  Q
    |||||||||||||||||||| |||| ||   ||||| |||||||  |||||| ||| ||||||| ||||||||| ||||||||||||||||    
T  36801196 gatttagtaggtaaacgatccctcagcagttgccaagcaaggatataaacttttaagggaacctatttatgctaaattaactccatatttt 36801106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 7031138 - 7031055
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactcc 113  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  ||| || ||||||||||||||||||| | |||||||||    
T  7031138 gatttagtaggtaagcgatccctcaacagacgccaagcaaggatagaaagttttaaaggaacctgtttatgccaaattaactcc 7031055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 2170361 - 2170481
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| ||||||   |||||| |||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2170361 gatttagtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacat 2170460  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  2170461 gaggttgttcctgtgatgtca 2170481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 20824315 - 20824435
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  20824315 gatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 20824414  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  20824415 gaggttgttcctgtgatgtca 20824435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 37434151 - 37434271
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||| ||  | |||| ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  37434151 gatttagtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatgaacat 37434250  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  37434251 gaggttgttcctgtgatgtca 37434271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 13200143 - 13200262
Alignment:
Q  31 atttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatg 130  Q
    |||| |||||||||||||| ||||| | | ||||| |||||||| |||||| || |||||||||||||||| | | ||||||||||||||||||||||||    
T  13200143 attttgtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgaacatg 13200242  T
Q  131 aggttgttcctctgatgtca 150  Q
    ||||||||||| ||||||||    
T  13200243 aggttgttcctgtgatgtca 13200262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 17699505 - 17699621
Alignment:
Q  34 tagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgagg 133  Q
    |||||||||||||||| |||| ||  |||||| |||||||  |||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||    
T  17699505 tagtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatgaacatgagg 17699604  T
Q  134 ttgttcctctgatgtca 150  Q
    |||||| | ||||||||    
T  17699605 ttgttcatgtgatgtca 17699621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 43270471 - 43270578
Alignment:
Q  32 tttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatga 131  Q
    ||||||||| ||||||||  ||||||  ||||||  ||||||  |||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  43270471 tttagtaggcaaacgatccttcaacagtcgccaagtaaggatagaaacttttaaaggaacctgtttatgccagatgaactccatattttgatgaacatga 43270570  T
Q  132 ggttgttc 139  Q
    ||||||||    
T  43270571 ggttgttc 43270578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 25090396 - 25090526
Alignment:
Q  20 tgtcaagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattt 119  Q
    |||||| |||| |||||||||||  ||||| ||||||||||||||| |||||||| |||||| || ||| |||||||| ||||||| ||||||||||||     
T  25090396 tgtcaaattggctttagtaggtagtcgatccctcaacaaccgccaagcaaggattgaaacttttagaggtacctgtttgtgctagactaactccatattg 25090495  T
Q  120 tgatgaacatgaggttgttcctctgatgtca 150  Q
    ||||||| |||||  ||||| | ||||||||    
T  25090496 tgatgaagatgagagtgttcatgtgatgtca 25090526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 13879611 - 13879499
Alignment:
Q  27 ttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaa 126  Q
    |||| |||||||||||||||||| ||||||||||||||| ||| || |  |||||  | ||| |||| ||| ||| ||| |||||||||| |||||||||    
T  13879611 ttggctttagtaggtaaacgatccctcaacaaccgccaagcaaagactgtaactttgagaggtacctatttgtgccagactaactccatactttgatgaa 13879512  T
Q  127 catgaggttgttc 139  Q
      |||||||||||    
T  13879511 tctgaggttgttc 13879499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 42177664 - 42177590
Alignment:
Q  76 aaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggttgttcctctgatgtca 150  Q
    |||||| |||||||||||||| |||| | |||||||||| |||||||||||||| | ||||||| | ||||||||    
T  42177664 aaacttttaaaggaacctgttaatgccatattaactccaaattttgatgaacataaagttgttcatgtgatgtca 42177590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 43388386 - 43388506
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||| |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  43388386 gatttagtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 43388485  T
Q  130 gaggttgttcctctgatgtca 150  Q
    || ||||||||| ||||||||    
T  43388486 gaagttgttcctgtgatgtca 43388506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 37191338 - 37191211
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||  |||||| |||| ||||| |||||||| ||||||||||||||||||||    
T  37191338 caagttggatttagtaggtaatcgatctctcaacagccgccaagcaaggatataaacttttaaatgaaccagtttatgccagattaactccatattttga 37191239  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    ||||||||||||||||| | ||||||||    
T  37191238 tgaacatgaggttgttcatgtgatgtca 37191211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 16917930 - 16917810
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||||||||     
T  16917930 gatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaa 16917831  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  16917830 gaggttgttcctgtgatgtca 16917810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 51993859 - 51993757
Alignment:
Q  20 tgtcaagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattt 119  Q
    |||||| |||| |||||||||||||||||| || | |||||||||| |||||  |  ||||| || ||| |||||||| ||| ||| |||||||||| ||    
T  51993859 tgtcaaattggctttagtaggtaaacgatcccttatcaaccgccaagcaagggctgtaacttttagaggtacctgtttgtgccagactaactccatactt 51993760  T
Q  120 tga 122  Q
    |||    
T  51993759 tga 51993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 20883161 - 20883034
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    |||||| |||||||||||||||| ||| ||||||| ||||||| |||||||  |||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  20883161 caagttcgatttagtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagattaactccatattttga 20883062  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    |||||||| |||||||||| ||||||||    
T  20883061 tgaacatgtggttgttcctgtgatgtca 20883034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 10577370 - 10577250
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||| ||||||||||||||||    
T  10577370 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactctatattttgatgaacat 10577271  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  10577270 gaggttgttcctgtgatgtca 10577250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 17606455 - 17606335
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    ||||||||||||||| |||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  17606455 gatttagtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacat 17606356  T
Q  130 gaggttgttcctctgatgtca 150  Q
    ||| |||||||| ||||||||    
T  17606355 gagattgttcctgtgatgtca 17606335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 21630228 - 21630108
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    ||||| |||||||||||||| ||||| |  ||||||||||||||  |||||| |||||||||||| |||||| | |||||||||||||||||||||||||    
T  21630228 gattttgtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattttgatgaacat 21630129  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  21630128 gaggttgttcctgtgatgtca 21630108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 17573776 - 17573656
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  || ||| ||||||||||||||||||| | ||||||||||||||||||| |||||    
T  17573776 gatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaatcttttaaaggaacctgtttatgccaaattaactccatattttgataaacat 17573677  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  17573676 gaggttgttcctgtgatgtca 17573656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 11462424 - 11462546
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    |||||||||||||||||||||| |||| ||||||| | ||||| |||||||| |||||| |     ||||||||||| | ||||||||||||||||||||    
T  11462424 caagttggatttagtaggtaaaagatccctcaacagctgccaagcaaggattgaaactttt-----aacctgtttataccagattaactccatattttga 11462518  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    |||| |||  ||||||||| ||||||||    
T  11462519 tgaatatgttgttgttcctgtgatgtca 11462546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 17579202 - 17579109
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgat 123  Q
    |||||||||||||| ||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | |||||||||||||||||||    
T  17579202 gatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgat 17579109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 15958928 - 15958814
Alignment:
Q  36 gtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 135  Q
    ||||||||| |||| ||||| | ||||||| |||| ||  | ||||  | |||||||||||||||| | ||||||| ||||||| |||| |  ||| |||    
T  15958928 gtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgccatattaacttcatatttggatgtaactgaagtt 15958829  T
Q  136 gttcctctgatgtca 150  Q
    |||||| ||||||||    
T  15958828 gttcctgtgatgtca 15958814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 24767489 - 24767451
Alignment:
Q  86 aggaacctgtttatgctagattaactccatattttgatg 124  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  24767489 aggaacctgtttatgcaaaattaactccatattttgatg 24767451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 18651299 - 18651262
Alignment:
Q  86 aggaacctgtttatgctagattaactccatattttgat 123  Q
    |||||||||||||||| | |||||||||||||||||||    
T  18651299 aggaacctgtttatgccaaattaactccatattttgat 18651262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 20002737 - 20002864
Alignment:
Q  23 caagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttga 122  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||| |||  |||||| |||| |||||||||||||| | ||||||||||||||||||    
T  20002737 caagttggatttagtaggtaaacgatccctcaacagccgccaagcaatgatagaaacttttaaaagaacctgtttatgccaaattaactccatattttga 20002836  T
Q  123 tgaacatgaggttgttcctctgatgtca 150  Q
    | ||||||||||||||| | ||||||||    
T  20002837 ttaacatgaggttgttcgtgtgatgtca 20002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 45472824 - 45472710
Alignment:
Q  36 gtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 135  Q
    |||||||||||||| |||||||  ||||||||||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||     
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtg 45472725  T
Q  136 gttcctctgatgtca 150  Q
    |||||| ||||||||    
T  45472724 gttcctgtgatgtca 45472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 12697832 - 12697952
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  |||||| |||||||  |||||| ||||||||||||||||||| | ||||| | |||||||||||||||||    
T  12697832 gatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaatttcatattttgatgaacat 12697931  T
Q  130 gaggttgttcctctgatgtca 150  Q
    |||||||||||| ||||||||    
T  12697932 gaggttgttcctgtgatgtca 12697952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 8361119 - 8361236
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||| ||||||||||||  |||| ||  ||||||||||||||  |||||| ||| ||||||||||||||| | |||||||||||||||||||||||||    
T  8361119 gatttactaggtaaacgattcctcagcagtcgccaaacaaggatagaaacttttaagggaacctgtttatgccaaattaactccatattttgatgaacat 8361218  T
Q  130 gaggttgttcctctgatg 147  Q
    |||||||||||| |||||    
T  8361219 gaggttgttcctgtgatg 8361236  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 55725806 - 55725687
Alignment:
Q  31 atttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatg 130  Q
    |||| |||||||| ||||| ||||| | ||||||| |||||||| |||||| || |||||| ||||||||| | ||||||||||||||||||| ||||||    
T  55725806 attttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactccatattttgataaacatg 55725707  T
Q  131 aggttgttcctctgatgtca 150  Q
    ||||||||||| ||||||||    
T  55725706 aggttgttcctgtgatgtca 55725687  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 2822156 - 2822038
Alignment:
Q  32 tttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatga 131  Q
    |||||||||||| ||||| |||||||| |||||| || ||| | |||||| || ||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  2822156 tttagtaggtaagcgatccctcaacaatcgccaagcatggactgaaacttttagaggtacctgtttgtgccagattaactccatattttgatgaatatga 2822057  T
Q  132 ggttgttcctctgatgtca 150  Q
    |||||||||| ||||||||    
T  2822056 ggttgttcctatgatgtca 2822038  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 54483290 - 54483171
Alignment:
Q  20 tgtcaagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattt 119  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||| ||| || |  ||||| || ||| |||||||| ||| ||| |||||||||| ||    
T  54483290 tgtcaaattggttttagtaggtaaacgatccctcaacaaccgccaagcaaagactgtaacttttagaggtacctgtttgtgccagactaactccatactt 54483191  T
Q  120 tgatgaacatgaggttgttc 139  Q
    |||||||  |||||||||||    
T  54483190 tgatgaatctgaggttgttc 54483171  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 48312104 - 48312223
Alignment:
Q  20 tgtcaagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattt 119  Q
    |||||| |||| ||||||||||||| |||| |||||||||| |||| |||||| |  ||||| || | | |||||||| ||| ||| |||||||||| ||    
T  48312104 tgtcaaattggctttagtaggtaaatgatccctcaacaacccccaagcaaggactgtaacttttagatgtacctgtttgtgccagactaactccatactt 48312203  T
Q  120 tgatgaacatgaggttgttc 139  Q
    |||||||  |||||||||||    
T  48312204 tgatgaatctgaggttgttc 48312223  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 40176689 - 40176807
Alignment:
Q  32 tttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatga 131  Q
    |||||||||||||||||| ||||||||||||||| |||||| | |||||| || ||| |||||||| ||| ||| |||||||||||||||||||| ||||    
T  40176689 tttagtaggtaaacgatccctcaacaaccgccaagcaaggactgaaacttttagaggtacctgtttgtgccagactaactccatattttgatgaatatga 40176788  T
Q  132 ggttgttcctctgatgtca 150  Q
    |||||||||| ||||||||    
T  40176789 ggttgttcctgtgatgtca 40176807  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 14439771 - 14439891
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    |||||||||||||||||||| |||||||  || ||| | | |||  |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  14439771 gatttagtaggtaaacgatccctcaacagtcgtcaagccaagatagaaacttttaaaggaacctgtttatgccagattaactccatagtttgatgaacat 14439870  T
Q  130 gaggttgttcctctgatgtca 150  Q
    ||||| |||||| ||||||||    
T  14439871 gaggtcgttcctgtgatgtca 14439891  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 11000071 - 10999952
Alignment:
Q  30 gatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacat 129  Q
    ||||||||||| |||||||| || |||| || |||| |||||||  |||||| ||||| ||||||||||||  |||||||||||||||||||||||||||    
T  11000071 gatttagtaggcaaacgatccct-aacagccaccaagcaaggatagaaacttttaaagaaacctgtttatggcagattaactccatattttgatgaacat 10999973  T
Q  130 gaggttgttcctctgatgtca 150  Q
    ||| |||||||| ||||||||    
T  10999972 gagattgttcctatgatgtca 10999952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 12645544 - 12645675
Alignment:
Q  19 ctgtcaagttggatttagtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatatt 118  Q
    ||||||| ||| |||| |||||||| ||||| ||||| | ||||||| |||||||| |||||| || || ||||||||||||| | ||||||||||||||    
T  12645544 ctgtcaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagagaaacctgtttatgccaaattaactccatatt 12645643  T
Q  119 ttgatgaacatgaggttgttcctctgatgtca 150  Q
    ||||| ||||||||| | ||||| ||||||||    
T  12645644 ttgataaacatgagggttttcctgtgatgtca 12645675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 38604489 - 38604375
Alignment:
Q  36 gtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 135  Q
    |||||||||||||| || |||| | ||||  |||||||| |||||| || ||| || ||||||||| |||||||||||||||||||||||| || |||||    
T  38604489 gtaggtaaacgatctcttaacagcagccatgcaaggattgaaacttttagaggtacttgtttatgccagattaactccatattttgatgaaaattaggtt 38604390  T
Q  136 gttcctctgatgtca 150  Q
    |||||| ||||||||    
T  38604389 gttcctgtgatgtca 38604375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 41207041 - 41207155
Alignment:
Q  36 gtaggtaaacgatcactcaacaaccgccaaacaaggattaaaacttctaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 135  Q
    |||||||| ||||| ||||  | ||||||| |||||||  | ||||  | |||||||||||||||| | ||||||||||||||| |||| |  ||||| |    
T  41207041 gtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatatttggatgtaactgaggat 41207140  T
Q  136 gttcctctgatgtca 150  Q
    ||||||  |||||||    
T  41207141 gttcctgcgatgtca 41207155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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