View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_77 (Length: 247)
Name: NF20620_low_77
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12052241 - 12052010
Alignment:
| Q |
1 |
atcttacaatcaattttctcctctcgactcataatcatttgaactattattttctataataatttcaagtttaaaacattcttgtcatttatttgaccaa |
100 |
Q |
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| T |
12052241 |
atcttacaatcaattttctcctctcgactcataatcatttgaactattattttctacaataattttaagtttaaaacattcttgtcgtttatttgaccaa |
12052142 |
T |
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| Q |
101 |
aatcatctttataacttaat-nnnnnnncccttaatataaagtagactttcaagttcgacaactttcatagtttttcctaaattattaatgaagacggag |
199 |
Q |
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| T |
12052141 |
aatcatctttataacttaataaaaaaaacccttaatataaagtagactttcaagttcgacaactttcataatttttcctaaattattaatgaagacggag |
12052042 |
T |
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| Q |
200 |
taagttgatagacaaacttgatatatttcttc |
231 |
Q |
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| T |
12052041 |
taagttgatagacaaacttgatatatttcttc |
12052010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 26911429 - 26911519
Alignment:
| Q |
30 |
cataatcatttgaactattattttctataataatttcaagtttaaaacattcttgtcatttatttgaccaaaatcatctttataacttaat |
120 |
Q |
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| T |
26911429 |
cataatcatttaaactattattttctgcaaaaatttcatgtatacaacattcttgtcatttatttgacgaagatcgtctatagaacttaat |
26911519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 16576685 - 16576594
Alignment:
| Q |
30 |
cataatcatttgaacta-ttattttctataataatttcaagtttaaaacattcttgtcatttatttgaccaaaatcatctttataacttaat |
120 |
Q |
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| T |
16576685 |
cataatcatttgaacttctttttttttgtaaaaatttcacgtttacaacattcttgtcgtttatttgacgaagatcgtctctagaacttaat |
16576594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 16588977 - 16589068
Alignment:
| Q |
30 |
cataatcatttgaacta-ttattttctataataatttcaagtttaaaacattcttgtcatttatttgaccaaaatcatctttataacttaat |
120 |
Q |
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| T |
16588977 |
cataatcatttgaacttctttttttttgtaaaaatttcacgtttacaacattcttgtcgtttatttgacgaagatcgtctctagaacttaat |
16589068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 38137218 - 38137290
Alignment:
| Q |
30 |
cataatcatttgaactattattttctataataatttcaagtttaaaacattcttgtcatttatttgaccaaaa |
102 |
Q |
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||||||||||| |||||||||||||| || ||| ||| ||||| |||||| || ||||||||||||| |||| |
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| T |
38137218 |
cataatcatttaaactattattttctgcaacaatgtcatgtttacaacatttttatcatttatttgacaaaaa |
38137290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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