View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_low_83 (Length: 240)

Name: NF20620_low_83
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_low_83
NF20620_low_83
[»] chr2 (8 HSPs)
chr2 (20-232)||(1403222-1403435)
chr2 (20-116)||(1399517-1399613)
chr2 (43-147)||(410237-410341)
chr2 (25-117)||(974020-974112)
chr2 (23-123)||(982083-982183)
chr2 (58-147)||(821146-821235)
chr2 (26-117)||(965474-965565)
chr2 (52-89)||(989792-989829)
[»] chr6 (1 HSPs)
chr6 (43-117)||(10116756-10116830)
[»] chr7 (2 HSPs)
chr7 (58-137)||(1445999-1446078)
chr7 (73-138)||(12105286-12105351)
[»] chr3 (1 HSPs)
chr3 (23-153)||(45810459-45810589)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 1403222 - 1403435
Alignment:
Q  20 atctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403222 atctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatat 1403321  T
Q  120 aagaaacttatttgatttatcttttcttttcttatcgtgcattttttatgtactccaatttaaaat-attgacatttaaggnnnnnnnnnatacatatgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||         ||||||||||    
T  1403322 aagaaacttatttgatttatcttttcttttcttatcgtgcattttttatgtactccaatttaaaatgattgacatttaaggtttttttttatacatatgt 1403421  T
Q  219 ctgatgatgttaaa 232  Q
    ||||||||||||||    
T  1403422 ctgatgatgttaaa 1403435  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 1399517 - 1399613
Alignment:
Q  20 atctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaa 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  1399517 atctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagcttcaaaatcttgaattttacgaggtatgtgtcttaaa 1399613  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 410237 - 410341
Alignment:
Q  43 gatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataagaaacttatttgatttatctt 142  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||  |||||  ||| ||| | |||||| |||||| | |||||||||||||||    
T  410237 gatatagttgtacaagtgctccaccattgccctaagcttcaaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgatttatctt 410336  T
Q  143 ttctt 147  Q
    |||||    
T  410337 ttctt 410341  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 974112 - 974020
Alignment:
Q  25 gtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaat 117  Q
    |||||||||||| | || |||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||| |||| ||| | ||||||    
T  974112 gtgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgacctttatcaggtttgtttgttaaat 974020  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 982183 - 982083
Alignment:
Q  23 tggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataag 122  Q
    |||||||||||||| | ||  ||||| |||||| ||||||| ||||||||  ||||||||||||||||||| ||||| |||| ||| | |||||||||||    
T  982183 tggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgttaaatataag 982084  T
Q  123 a 123  Q
    |    
T  982083 a 982083  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 821146 - 821235
Alignment:
Q  58 gtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataagaaacttatttgatttatcttttctt 147  Q
    |||||| ||||||||||||||||||||||||||||  ||||| |||| ||  | |||| | |||||| | ||||||||||||||||||||    
T  821146 gtgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgatttatcttttctt 821235  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 965565 - 965474
Alignment:
Q  26 tgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaat 117  Q
    ||||||||||| | || |||||| |||| ||||||||| | ||||||||||||||||||||||||||  ||||| |||| ||| | ||||||    
T  965565 tgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgtttgttaaat 965474  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 989829 - 989792
Alignment:
Q  52 gtacaagtgctctaccattgccctaagcttcaaaatct 89  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  989829 gtacaagtgctccaccactgccctaagcttcaaaatct 989792  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10116830 - 10116756
Alignment:
Q  43 gatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaat 117  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||  ||||| |||| ||| | ||||||    
T  10116830 gatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttgttaaat 10116756  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 1446078 - 1445999
Alignment:
Q  58 gtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataagaaacttatttgattt 137  Q
    |||||||||| ||||||||||||||||||| |||| |||||| |||| ||| |||||| | ||| || | ||||||||||    
T  1446078 gtgctctacctttgccctaagcttcaaaatattgaattttatcaggtttgtttcttaattttaacaatcgtatttgattt 1445999  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 12105286 - 12105351
Alignment:
Q  73 cctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataagaaacttatttgattta 138  Q
    ||||||||||||||||||||| ||| | |||| ||| |||||||| ||| || | |||||||||||    
T  12105286 cctaagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta 12105351  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 45810589 - 45810459
Alignment:
Q  23 tggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatcttgacttttatgaggtatgtgtcttaaatataag 122  Q
    ||||| |||||||| | || |||||| |||||||||||||  | ||||| ||||||||||||| ||| ||| ||||| |||| ||  | |||||| |||     
T  45810589 tggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtctcgacctttatcaggtttgcttgttaaatttaac 45810490  T
Q  123 aaacttatttgatttatcttttcttttctta 153  Q
     | | |||||||||||| ||||  |||||||    
T  45810489 gatcatatttgatttatttttttctttctta 45810459  T

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