View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_84 (Length: 239)
Name: NF20620_low_84
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26142249 - 26142028
Alignment:
| Q |
1 |
tttcaatgtataattctattcttgatctttcacacgtttgcatgcgcatgtggatagtgaaagacagatgttttatgcctcatttgttatatgagacatt |
100 |
Q |
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| T |
26142249 |
tttcaatgtataattctattcttgatctttcacacgtttgcatgcgcatgcggatagtgaaagacatatgttttatgcctcatttgttatatgagacatt |
26142150 |
T |
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| Q |
101 |
ataactttcttactctctattgtacttaatgtacgtttggcaaatgtaatactcataatgaaaattgccaatttcatcttgaaaagctctgttaaaaaat |
200 |
Q |
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| T |
26142149 |
ataactttcttactctctactgtacttaatgtacgtttggcaaatgtaatactcataatgaaaattgccaatttcatcttgaaaagctctgttaaaaaaa |
26142050 |
T |
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| Q |
201 |
ttcaactttgaaaaggtgatct |
222 |
Q |
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||||||||||||||||||||| |
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| T |
26142049 |
atcaactttgaaaaggtgatct |
26142028 |
T |
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Back To:
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 33492775 - 33492732
Alignment:
| Q |
31 |
cacacgtttgcatgcgcatgtggatagtgaaagacagatgtttt |
74 |
Q |
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| T |
33492775 |
cacacgtttgcatgctcatgcggatagtgaaagacagatgtttt |
33492732 |
T |
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