View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_90 (Length: 236)
Name: NF20620_low_90
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 278112 - 277888
Alignment:
| Q |
1 |
attttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttctaggcacaatttcatgcttggg |
100 |
Q |
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| T |
278112 |
attttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttctaggcacaatttcatccttggg |
278013 |
T |
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| Q |
101 |
ttttctatttttagtttattcgtatattatggataaatatccatacaatcagataaggattaatttatgtctataattagatttccttcctacct----- |
195 |
Q |
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| T |
278012 |
ttttctatttttagtttattcgtatattatggat-aatatccatacaatcgaataaggattaatttatgtctataattagatttccttcctaccttaaaa |
277914 |
T |
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| Q |
196 |
taaaatggtcttttggttgaagtttt |
221 |
Q |
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| T |
277913 |
taaaatggtcttttggttgaagtttt |
277888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 289733 - 289571
Alignment:
| Q |
59 |
ggtcaatgtacaagtttttc-taggcacaatttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatcagataag |
157 |
Q |
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| T |
289733 |
ggtcaatgtacagatttttaataggcacaattttatacatgggttttctatttttagtttatttacgtattatggatga-tatccatacaatcagataag |
289635 |
T |
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| Q |
158 |
gattaatttatgtctataattagatttccttcctaccttaaaatggtcttttggttgaagtttt |
221 |
Q |
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| T |
289634 |
gattgatttatgtctatgactagattcacttcctaccttaaaatggttttttggttgaggtttt |
289571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 24531507 - 24531306
Alignment:
| Q |
11 |
catgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttc-taggcacaatttcatgcttgggttttctatt |
109 |
Q |
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| T |
24531507 |
catgcaataagaaatttccaaaccatatgattgaatgaatca-tctagggtcaatgtacaagttttttataggcacaatttcatacatgggttttctatt |
24531409 |
T |
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| Q |
110 |
tttagtttattcgtatattatggataaatatccatacaatcagataaggattaatttatgtctataattagatttccttcctaccttaaaatggtctttt |
209 |
Q |
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| T |
24531408 |
tttagtttatt--------attgatga-tatccatacactcagataaggattgatttatgtcaatgattagattcacttcctaccttaaaatggtttttt |
24531318 |
T |
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| Q |
210 |
ggttgaagtttt |
221 |
Q |
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|||||| ||||| |
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| T |
24531317 |
ggttgaggtttt |
24531306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 24524041 - 24523881
Alignment:
| Q |
53 |
atctatggtcaatgtacaagtttttc-taggcacaatttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatca |
151 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||| || ||| | |||||||||| ||| |
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| T |
24524041 |
atctagggtcaatgtacaagttttttataggcacaatttcatacatggattttctatttttagtttatt--------attgatga-tatccatacactca |
24523951 |
T |
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| Q |
152 |
gataaggattaatttatgtctataattagatttccttcctaccttaaaatggtcttttggttgaagtttt |
221 |
Q |
| |
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|||||||||| ||||||||| || |||||||| ||||||||||||||||| | |||||||||| ||||| |
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| T |
24523950 |
gataaggattgatttatgtcaatgattagattcacttcctaccttaaaatgattttttggttgaggtttt |
24523881 |
T |
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