View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_96 (Length: 222)
Name: NF20620_low_96
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 50392907 - 50393094
Alignment:
| Q |
17 |
aatatggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcct |
116 |
Q |
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| T |
50392907 |
aatatggcggttggtaattccattggtgttcacggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcct |
50393006 |
T |
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| Q |
117 |
cctttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaag |
204 |
Q |
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| T |
50393007 |
cctttcttatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaag |
50393094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 50384490 - 50384676
Alignment:
| Q |
19 |
tatggcggttggtaattccattggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcc |
118 |
Q |
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| T |
50384490 |
tatggcggtaggtaattccattggtgttcatggtttgggagacatgaagagtctcaccgtccaattcatcaccgggcgttggttcgtcatttttgcctcc |
50384589 |
T |
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| Q |
119 |
tttctgatcatggcagcagccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaagt |
205 |
Q |
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| T |
50384590 |
tttctaatcatggcagcagccggagccacctacatgttcggtctatactccccagacataaaaacaacacttggctatgaccaaagt |
50384676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 50389654 - 50389820
Alignment:
| Q |
38 |
attggtgttcatggtttaggagacatgaagagtctcactgtccaattcatcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcag |
137 |
Q |
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| T |
50389654 |
attggtgttcatgattggggagacatgaagagtctcaccgtccaagtcatcaccggacggtggtttgtcatttttgcctcctttctaatcatgtcggctg |
50389753 |
T |
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| Q |
138 |
ccggagccacctacatgtttggtctatactccggcgacataaaaacaacacttggctatgaccaaag |
204 |
Q |
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| T |
50389754 |
ccggagccacctacatgttcggtctatactccagcgacataaaagaaacacttggctatgaccaaag |
50389820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 50406589 - 50406671
Alignment:
| Q |
86 |
atcaccggacggtggttcgtcatttttgcctcctttctgatcatggcagcagccggagccacctacatgtttggtctatactc |
168 |
Q |
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| T |
50406589 |
atcacaggacgatggttcgtggtgtttgcttcttttctaatcatgtcagcttcaggagccacctacatgtttggtctttactc |
50406671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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