View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20621_low_2 (Length: 332)
Name: NF20621_low_2
Description: NF20621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20621_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 40635209 - 40634880
Alignment:
| Q |
1 |
aattagaattaaaagtagagtttatgacaaaataaaggaggaagtaagatttaaggatggagagtataaaacatgagaaagcattatnnnnnnnttgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40635209 |
aattagaattaaaagtagagtttatgacaaaataaaggaggaaggaagatttaaggatggagagtataaaacatgagaaagcattataaaaaaattgatg |
40635110 |
T |
|
| Q |
101 |
gaatctatcccaaatggtacgaaatgaggttgagaaacactgagtttaggtcgaacatctagttaagtctaaagcaaactttcagcaaatcattttataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635109 |
gaatctatcccaaatggtacgaaatgaggttgagaaacactgagtttaggtcgaacatctagttaagtctaaagcaaactttcagcaaatcattttataa |
40635010 |
T |
|
| Q |
201 |
at--gtttttcgaaacacaccactttaaatccgacatccatgattgatagcaagttattttcttgagagacctaaagaaagagcctcacttacttgacac |
298 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635009 |
atatgtttttcgaaacacaccactttaaatccgacatccatgattgatagcaagttattttcttgagagacctaaagaaagagcctcacttacttgacac |
40634910 |
T |
|
| Q |
299 |
aaaccatcaatattcccatgttttctgtgc |
328 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40634909 |
aaaccatcaatattcccatgttttctgtgc |
40634880 |
T |
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