View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20621_low_3 (Length: 327)
Name: NF20621_low_3
Description: NF20621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20621_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 5399811 - 5400115
Alignment:
| Q |
17 |
aaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacac |
116 |
Q |
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||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5399811 |
aaattagcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacac |
5399910 |
T |
|
| Q |
117 |
aaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctg |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5399911 |
aaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctg |
5400010 |
T |
|
| Q |
217 |
aataaaatagttgaacaaatagctgatttaattatataacaaaataattaatgccagttatattaattgttgtctaggtgactaaatataagttccaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400011 |
aataaaatagttgaacaaatagctgatttaattatataacaaaataattaatgccagttatattaattgttgtctaggtgactaaatataagttccaaga |
5400110 |
T |
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| Q |
317 |
ataat |
321 |
Q |
| |
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|||| |
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| T |
5400111 |
ttaat |
5400115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 5391092 - 5391298
Alignment:
| Q |
17 |
aaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacac |
116 |
Q |
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||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5391092 |
aaattagcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacac |
5391191 |
T |
|
| Q |
117 |
aaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctg |
216 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
5391192 |
aaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctg |
5391291 |
T |
|
| Q |
217 |
aataaaa |
223 |
Q |
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||||||| |
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| T |
5391292 |
aataaaa |
5391298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 5394630 - 5394831
Alignment:
| Q |
17 |
aaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcggcgtaaacac |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5394630 |
aaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacac |
5394729 |
T |
|
| Q |
117 |
aaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttactcacctg |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5394730 |
aaagcgtgccaatgacgttcatcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctg |
5394829 |
T |
|
| Q |
217 |
aa |
218 |
Q |
| |
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|| |
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|
| T |
5394830 |
aa |
5394831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 3819018 - 3819103
Alignment:
| Q |
80 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
165 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
3819018 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 47338859 - 47338774
Alignment:
| Q |
80 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
165 |
Q |
| |
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|||| |||||||||||| |||||||| ||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
47338859 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
89 |
tcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagat |
165 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 47347317 - 47347233
Alignment:
| Q |
92 |
tgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctgtaaggtgaaaatccaaagataacttgtggtc |
176 |
Q |
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|||||||||||||| || ||||||||||| || |||| || ||||||| || ||||||||||||||||| |||||||| |||| |
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| T |
47347317 |
tgcttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtc |
47347233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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