View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20622_low_2 (Length: 492)
Name: NF20622_low_2
Description: NF20622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20622_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 5586972 - 5586503
Alignment:
| Q |
8 |
gacatcatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctc |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586972 |
gacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctc |
5586873 |
T |
|
| Q |
108 |
aaactataaagttattttgattgcagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtg |
207 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586872 |
aaactataaagttattttgattgtagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtg |
5586773 |
T |
|
| Q |
208 |
aactatgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttc |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586772 |
aactacgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttc |
5586673 |
T |
|
| Q |
308 |
atctttaaataaattggtattgctacagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagactt |
407 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586672 |
atctttaaataaattcgtattgctacagggttttgtcatcagtttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagactt |
5586573 |
T |
|
| Q |
408 |
ggaagtcttaacaaagctcaagaataccttaataaatgcttatattatgtgcatattggcagtaatgatt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586572 |
ggaagtcttaacaaagctcaagaataccttaataaatgcttatattatgtgcatattggcagtaatgatt |
5586503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 5593205 - 5592953
Alignment:
| Q |
8 |
gacatcatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctc |
107 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593205 |
gacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctt |
5593106 |
T |
|
| Q |
108 |
aaactataaagttattttgattgcagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtg |
207 |
Q |
| |
|
||||||| || || || |||||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
5593105 |
aaactatgaacttctt---attgcagctcagttacttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtg |
5593009 |
T |
|
| Q |
208 |
aactatgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggttta |
263 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| | |||||||||||| |
|
|
| T |
5593008 |
aactatgcatctggcggagctggaattcgtatggagacatactcggctaaggttta |
5592953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 5576504 - 5576256
Alignment:
| Q |
55 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttgattgcagctcagcttcttggctttgaga |
154 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
5576504 |
aagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgaga |
5576405 |
T |
|
| Q |
155 |
acttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcgcagctggaattcgtaccgagacaagcatggc |
254 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
5576404 |
aattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcataac |
5576305 |
T |
|
| Q |
255 |
taaggtttacataaattagaaatcaaagagccttttcatttctttgattgttcatc |
310 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5576304 |
tacggt----ataaatt---gatcaaagagccttttcatttatttgattgttcatc |
5576256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 55 - 252
Target Start/End: Complemental strand, 5582673 - 5582477
Alignment:
| Q |
55 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttg-attgcagctcagcttcttggctttgag |
153 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5582673 |
aagtgtttttcattgttcttttctcttcttat-ttaagcttttgattcagctcaaactataaagttattttttattgcagctcagcttcttgt-tttgag |
5582576 |
T |
|
| Q |
154 |
aacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcgcagctggaattcgtaccgagacaagcatg |
252 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| | | ||||||||||||| ||||||||||||| |
|
|
| T |
5582575 |
aacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcgtggagctggaattcgtgtcgagacaagcatg |
5582477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 333 - 477
Target Start/End: Complemental strand, 5576167 - 5576023
Alignment:
| Q |
333 |
cagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaat |
432 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||| | || || ||||||||||||||| |
|
|
| T |
5576167 |
cagggttttgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattgacaaagctcaagaat |
5576068 |
T |
|
| Q |
433 |
accttaataaatgcttatattatgtgcatattggcagtaatgatt |
477 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5576067 |
accttagcaaatgcttgtattatgtgaatattggcagtaatgatt |
5576023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 5573357 - 5573241
Alignment:
| Q |
122 |
ttttgattgcagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctgg |
221 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573357 |
ttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcatctgg |
5573258 |
T |
|
| Q |
222 |
cgcagctggaattcgta |
238 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5573257 |
cggagctggaattcgta |
5573241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 477
Target Start/End: Complemental strand, 5592855 - 5592729
Alignment:
| Q |
351 |
ttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaataccttaataaatgcttat |
450 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||| ||||||||||||||||| ||||||| | || |||||||||||||||||||||| |||||||| | |
|
|
| T |
5592855 |
ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgt |
5592756 |
T |
|
| Q |
451 |
attatgtgcatattggcagtaatgatt |
477 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5592755 |
attatgtgcatattggcagtaatgatt |
5592729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 351 - 477
Target Start/End: Complemental strand, 5573118 - 5572992
Alignment:
| Q |
351 |
ttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaataccttaataaatgcttat |
450 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||||| |||||||| | |
|
|
| T |
5573118 |
ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttggaggtattgacaaagctcaacaataccttaacaaatgcttgt |
5573019 |
T |
|
| Q |
451 |
attatgtgcatattggcagtaatgatt |
477 |
Q |
| |
|
|||||||| ||||||| ||||| |||| |
|
|
| T |
5573018 |
attatgtgaatattggaagtaacgatt |
5572992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 257
Target Start/End: Original strand, 12059434 - 12059567
Alignment:
| Q |
124 |
ttgattgcagctcagcttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcg |
223 |
Q |
| |
|
|||||||||||||| ||| |||| ||| |||| ||||||||| |||||||||||| |||||| ||||||||||||| || ||||||||||||||| | | |
|
|
| T |
12059434 |
ttgattgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatcagagg |
12059533 |
T |
|
| Q |
224 |
cagctggaattcgtaccgagacaagcatggctaa |
257 |
Q |
| |
|
||| |||||| ||| ||||||||| ||| |||| |
|
|
| T |
12059534 |
gagcaggaatttgtatcgagacaagtatgactaa |
12059567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 454
Target Start/End: Complemental strand, 5582299 - 5582176
Alignment:
| Q |
331 |
tacagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaaga |
430 |
Q |
| |
|
||||||||| ||| ||||| |||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||| || || ||| || || | |
|
|
| T |
5582299 |
tacagggttctgttatcagcttgggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttggaggtattgacagttctgaaca |
5582200 |
T |
|
| Q |
431 |
ataccttaataaatgcttatatta |
454 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
5582199 |
ataccttaacaaatgcttgtatta |
5582176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 12052030 - 12052162
Alignment:
| Q |
139 |
cttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcgcagctggaattcgta |
238 |
Q |
| |
|
|||||||| ||| ||| ||||||||| |||||||||||| |||||| | ||| || |||||||||||||| ||||||| || | ||| |||||||||| |
|
|
| T |
12052030 |
cttcttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcatatgagggagcaggaattcgta |
12052129 |
T |
|
| Q |
239 |
ccgagacaagcatggctaaggtttacataaatt |
271 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||| |
|
|
| T |
12052130 |
tcgagacaagcatgactaaagtttaaataaatt |
12052162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 12064819 - 12064932
Alignment:
| Q |
139 |
cttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcgcagctggaattcgta |
238 |
Q |
| |
|
|||||||| ||| |||| ||||||||| |||||||||||| |||||| |||||||||||||||| |||||| |||||||| | | ||| |||||| ||| |
|
|
| T |
12064819 |
cttcttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatccgagggagcgggaatttgta |
12064918 |
T |
|
| Q |
239 |
ccgagacaagcatg |
252 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
12064919 |
tcgagataagcatg |
12064932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 5558911 - 5558827
Alignment:
| Q |
152 |
agaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatctggcgcagctggaattcg |
236 |
Q |
| |
|
|||| ||||| ||||| |||||||||| || ||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5558911 |
agaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaattcg |
5558827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 5568572 - 5568505
Alignment:
| Q |
152 |
agaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgcatct |
219 |
Q |
| |
|
|||| ||||| |||||||||||||||| || |||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
5568572 |
agaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcatct |
5568505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 5582423 - 5582382
Alignment:
| Q |
274 |
aaatcaaagagcctt-ttcatttctttgattgttcatcttta |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5582423 |
aaatcaaagagccttcttcatttctttgattgttcatcttta |
5582382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 12054143 - 12054219
Alignment:
| Q |
139 |
cttcttggctttgagaacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactatgc |
215 |
Q |
| |
|
|||||||| |||||||| || ||| || ||||||||||| |||||| | ||||||||| |||||| ||||||||| |
|
|
| T |
12054143 |
cttcttggatttgagaatttaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgc |
12054219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 7017137 - 7017100
Alignment:
| Q |
199 |
aaaggtgtgaactatgcatctggcgcagctggaattcg |
236 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
7017137 |
aaaggtgttaactatgcatctggctcagctggaattcg |
7017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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