View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20622_low_5 (Length: 324)

Name: NF20622_low_5
Description: NF20622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20622_low_5
NF20622_low_5
[»] chr4 (5 HSPs)
chr4 (1-319)||(20572553-20572871)
chr4 (107-304)||(20309752-20309948)
chr4 (112-319)||(18618532-18618738)
chr4 (74-271)||(2767592-2767788)
chr4 (175-227)||(2758013-2758065)
[»] chr8 (5 HSPs)
chr8 (108-297)||(18450453-18450640)
chr8 (112-278)||(29388733-29388898)
chr8 (124-312)||(20685300-20685487)
chr8 (118-312)||(14755936-14756132)
chr8 (144-217)||(16722051-16722124)
[»] scaffold0067 (2 HSPs)
scaffold0067 (71-273)||(12681-12882)
scaffold0067 (111-273)||(19779-19940)
[»] chr6 (4 HSPs)
chr6 (111-312)||(17795445-17795645)
chr6 (128-309)||(22337228-22337409)
chr6 (131-227)||(22724557-22724653)
chr6 (202-278)||(22266987-22267063)
[»] scaffold0027 (1 HSPs)
scaffold0027 (71-313)||(52877-53118)
[»] scaffold0039 (2 HSPs)
scaffold0039 (122-309)||(64117-64303)
scaffold0039 (122-309)||(66064-66250)
[»] chr7 (4 HSPs)
chr7 (108-214)||(4007067-4007172)
chr7 (108-214)||(4012459-4012564)
chr7 (131-310)||(14616345-14616523)
chr7 (204-310)||(14616087-14616193)
[»] chr2 (1 HSPs)
chr2 (118-273)||(23469447-23469602)
[»] chr5 (2 HSPs)
chr5 (126-310)||(17713694-17713873)
chr5 (176-278)||(23909769-23909871)
[»] chr1 (2 HSPs)
chr1 (112-159)||(16884360-16884407)
chr1 (108-169)||(17051637-17051698)
[»] chr3 (1 HSPs)
chr3 (122-253)||(21487138-21487262)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 20572871 - 20572553
Alignment:
Q  1 ttttttccataactgcgttaacattgtatggacattgcccataactataatcagacctaataaaccacgataggggtacatcatctctttgtagaagaat 100  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  20572871 ttttttccataactactttaacattgtatggacattgcccataactataatcagacctgctaaaccacgataggggtacatcatctctttgtagaagaat 20572772  T
Q  101 tgatctattctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20572771 tgatctattctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatattctattctaagaaattacac 20572672  T
Q  201 tagatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  20572671 tagatccaatcttcaaggcctcttgaagtcagacagccacaaggtcttcaaatttcaagcttgtatgcaatcccttgatcttaaactccgagaaatcgtc 20572572  T
Q  301 tttgctatgcctttgcttc 319  Q
    ||||||||||||| |||||    
T  20572571 tttgctatgccttcgcttc 20572553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 107 - 304
Target Start/End: Original strand, 20309752 - 20309948
Alignment:
Q  107 attctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatc 206  Q
    |||||| ||| |||||| ||||| |||||||||||| |||||| |||||||||| | ||||||  |  |||| |||||| ||||| |||  ||| |||||    
T  20309752 attctatgggcttccaccatgattaaaatgtttacaagtgtatgattacaaagattacttcgat-tcctaattttctatgctaagcaatggcacaagatc 20309850  T
Q  207 caatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttg 304  Q
    ||||||||||| ||||||||| |  |||| ||| ||||| ||||||| ||||| ||| ||| ||||| |||||||| |||||| ||||||| ||||||    
T  20309851 caatcttcaagacctcttgaaattggacaaccataaggtcttcaaatctcaagattgcatgaaatcctttgatcttttactccaagaaatcgtctttg 20309948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 319
Target Start/End: Original strand, 18618532 - 18618738
Alignment:
Q  112 acgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatc 211  Q
    ||||| || ||||||||||||||||||||||  | ||| ||| |||||| || || ||  |  ||||||||||| ||||| ||| | | || ||||||||    
T  18618532 acgggctttcactatgatgaaaatgtttacaaatatatgattgcaaagattcttttgat-tcctaatcttctatgctaagcaatcagaataaatccaatc 18618630  T
Q  212 ttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgcc 311  Q
    || ||| ||||||||| |  |||||||||||||| ||  ||| ||||||||| |||||||||||| | ||| ||||| ||||| || |||||||||||||    
T  18618631 tttaagacctcttgaaattggacagccacaaggtctttgaatctcaagcttgcatgcaatcccttaaacttctactctgagaattcgtctttgctatgcc 18618730  T
Q  312 tttgcttc 319  Q
    || |||||    
T  18618731 ttcgcttc 18618738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 2767788 - 2767592
Alignment:
Q  74 gggtacatcatctctttgtagaagaattgatctattctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaatt 173  Q
    |||||| ||||||||| |||||||||    |||||||||| | |||||||||||||||   | |||||| |  ||| |||||||||| || ||  |  ||    
T  2767788 gggtacgtcatctcttcgtagaagaaaacttctattctacagaattccactatgatgattttttttacaagattatgattacaaagattctttatat-tt 2767690  T
Q  174 ataatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaat 271  Q
     ||||||||||| ||| | ||| |||||||||| ||||||||||  |||||||| ||  ||||||||||||| ||| ||||||||||||| |||||||    
T  2767689 ctaatcttctatgctaggcaataacactagatctaatcttcaagctctcttgaaatctaacagccacaaggtcttcgaatttcaagcttgcatgcaat 2767592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 2758065 - 2758013
Alignment:
Q  175 taatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaa 227  Q
    ||||||||||| ||| | ||| |||||||||||||||||||||  ||||||||    
T  2758065 taatcttctatgctaggcaatcacactagatccaatcttcaagctctcttgaa 2758013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 18450640 - 18450453
Alignment:
Q  108 ttctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatcc 207  Q
    ||||||||| |||||||||||||||||| |||||| |||||| |||||||||| | ||||||  |  ||||||||||| ||||| ||| |||| ||||||    
T  18450640 ttctacggg-ttccactatgatgaaaatatttacaagtgtatgattacaaagatttcttcgat-tcctaatcttctatgctaagcaatcacacaagatcc 18450543  T
Q  208 aatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatc 297  Q
    ||||||||||  |||||||| | | ||||||||||| | ||  ||| ||||||||| ||||||||| |||||||| ||||||||||||||    
T  18450542 aatcttcaagaactcttgaaattacacagccacaagatctttgaatctcaagcttgcatgcaatcctttgatcttctactccgagaaatc 18450453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 278
Target Start/End: Original strand, 29388733 - 29388898
Alignment:
Q  112 acgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatc 211  Q
    ||||| |||||||||||||||||||| ||||  ||||| || ||||||| || |||||  | |||||||||||| ||||| ||| |||| ||||||||||    
T  29388733 acgggcttccactatgatgaaaatgtgtacaaatgtatgataacaaagattctttcgat-tcataatcttctatgctaagcaatcacacaagatccaatc 29388831  T
Q  212 ttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttga 278  Q
    ||||||  |||||||| | |||||| |||||||| ||| ||| |  |||||| ||||||||||||||    
T  29388832 ttcaagttctcttgaaattagacagtcacaaggtcttcgaatctagagcttgcatgcaatcccttga 29388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 312
Target Start/End: Original strand, 20685300 - 20685487
Alignment:
Q  124 tatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcctct 223  Q
    ||||||||||||||||||| |||||| | |||||||| || |||||  |  |||| |||||| ||||| ||| |||| |||||||||||||||  |||||    
T  20685300 tatgatgaaaatgtttacaagtgtatgaatacaaagattctttcgat-tcctaatgttctatgctaagcaatcacacaagatccaatcttcaaaacctct 20685398  T
Q  224 tgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgcct 312  Q
    |||| |  |||||||| ||| | ||| ||  ||||||||| ||||||||| |||| ||| ||||  ||||| || ||||||||||||||    
T  20685399 tgaatttggacagccataagatcttcgaacctcaagcttgcatgcaatcctttgaacttctactttgagaattcgtctttgctatgcct 20685487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 312
Target Start/End: Original strand, 14755936 - 14756132
Alignment:
Q  118 ttccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcga--aattataatcttctattctaagaaattacactagatccaatcttca 215  Q
    ||||||||||||||||||||||||| |||||| |||||||||| | | ||||    |  ||||| | |||   ||| ||| ||||||||| |||||||||    
T  14755936 ttccactatgatgaaaatgtttacaagtgtatgattacaaagatttcatcgattcctcctaatcatttatgtcaagcaatcacactagattcaatcttca 14756035  T
Q  216 aggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgcct 312  Q
    ||  |||||||| || |  ||||| ||||| ||| ||| |||||| || ||||||||| ||||| || | |||| | ||||| |||||| |||||||    
T  14756036 agctctcttgaaatcgggtagccaaaaggtcttcgaatctcaagcatgcatgcaatcctttgattttcttctcctaaaaatcatctttgatatgcct 14756132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 16722124 - 16722051
Alignment:
Q  144 gtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaag 217  Q
    |||||| |||||||||| ||||||||  |  |||| |||||| ||||| ||| |||| ||||||||||||||||    
T  16722124 gtgtatgattacaaagattccttcgatttcctaattttctatgctaagcaatcacacaagatccaatcttcaag 16722051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 273
Target Start/End: Original strand, 12681 - 12882
Alignment:
Q  71 taggggtacatcatctctttgtagaagaattgatctattctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaa 170  Q
    ||||||||  ||||||||| ||||||  ||   ||| ||||||||| |||||||| |||||||||||||||| | |||| |||||||||| ||||||||     
T  12681 taggggtatgtcatctcttcgtagaaatatacgtctcttctacgggcttccactacgatgaaaatgtttacaagcgtatgattacaaagattccttcgat 12780  T
Q  171 attataatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaa 270  Q
     | | |||||||||| ||||| ||| |||| |||||||||||||||| ||||||||| | ||||||||||||| | ||| ||| ||||| ||| ||||||    
T  12781 -tcacaatcttctatactaagtaatcacacaagatccaatcttcaagacctcttgaatttagacagccacaagatcttcgaatctcaagtttgcatgcaa 12879  T
Q  271 tcc 273  Q
    |||    
T  12880 tcc 12882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 19779 - 19940
Alignment:
Q  111 tacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaat 210  Q
    |||||| |||||||| |||||||||||||||| | |||| |||||||||| ||||||||  | | |||||||||| ||||| ||| |||| |||||||||    
T  19779 tacgggcttccactacgatgaaaatgtttacaagcgtatgattacaaagattccttcgat-tcacaatcttctatactaagtaatcacacaagatccaat 19877  T
Q  211 cttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcc 273  Q
    ||||||| ||||||||| | ||||||||||||| | ||  ||| ||||| ||| |||||||||    
T  19878 cttcaagacctcttgaatttagacagccacaagatcttagaatctcaagtttgcatgcaatcc 19940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 312
Target Start/End: Original strand, 17795445 - 17795645
Alignment:
Q  111 tacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaat 210  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||| | | |||||||| ||| | ||| |  |||||||| |||||     
T  17795445 tacgggcttccactatgatgaaaatgtttacaagtgtatgattacaaagattccttcg-attcataatcttttatgccaagcagctacactaggtccaac 17795543  T
Q  211 cttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgc 310  Q
    ||||||  ||||||||| || |||| ||||||||| ||||||| |  |||||| |||| |||| ||||||||  |||  |||||||| |||||| |||||    
T  17795544 cttcaatacctcttgaaatcggacaaccacaaggtcttcaaatctatagcttgcatgcgatcctttgatcttccactttgagaaatcgtctttgttatgc 17795643  T
Q  311 ct 312  Q
    ||    
T  17795644 ct 17795645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 22337409 - 22337228
Alignment:
Q  128 atgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaa 227  Q
    ||||||||||||||| |||||| |||| ||||| ||||| ||     | ||||| ||| ||||| ||||||   |||||||||||||||| |||| ||||    
T  22337409 atgaaaatgtttacaagtgtatgattataaagattcctttgattccctcatcttttatgctaagcaattactaaagatccaatcttcaagtcctcatgaa 22337310  T
Q  228 gtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatg 309  Q
     |   ||||||||||||| ||| ||| ||||||||  ||||||||||||||  |  ||||||||||| || | |||||||||    
T  22337309 attgaacagccacaaggtcttcgaatctcaagcttccatgcaatcccttgaattgctactccgagaattcgtatttgctatg 22337228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 22724653 - 22724557
Alignment:
Q  131 aaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaa 227  Q
    |||||||||||| |||||| |||||||||| ||||||||     ||||||| ||| ||||| ||| |||| |||||||||||||||| |||| ||||    
T  22724653 aaaatgtttacaagtgtatgattacaaagattccttcgattccctaatcttatatgctaaggaatcacacaagatccaatcttcaagacctcatgaa 22724557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 22267063 - 22266987
Alignment:
Q  202 agatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttga 278  Q
    |||||||||||||||| |||||||||     |||| |||||||| ||| ||| ||||||||  ||||||||||||||    
T  22267063 agatccaatcttcaagtcctcttgaaactgaacagtcacaaggtcttcgaatctcaagcttccatgcaatcccttga 22266987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 52877 - 53118
Alignment:
Q  71 taggggtacatcatctctttgtagaagaattgatctattctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaa 170  Q
    ||||||||| || |||||||||||||||||  || ||||||||||| ||  | ||||||||||||||||||| |||||| |||| ||| | ||| | |      
T  52877 taggggtacgtcctctctttgtagaagaatacatatattctacgggctttaattatgatgaaaatgtttacaagtgtatgattataaaaattcccttg-- 52974  T
Q  171 atta-taatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgca 269  Q
    |||| ||||||| ||| ||||||||| |||| | ||||||||||||   ||||| ||| |  |||| ||||||||| ||| ||| | ||||||| |||||    
T  52975 attactaatcttttatgctaagaaatcacacaatatccaatcttcacaacctctggaaattggacaaccacaaggtcttcgaatcttaagcttgcatgca 53074  T
Q  270 atcccttgatcttatactccgagaaatcttctttgctatgcctt 313  Q
    |||| |||||||| | ||| |||||||| ||||| ||| |||||    
T  53075 atcctttgatcttctgctctgagaaatcgtcttttctaagcctt 53118  T

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Target: scaffold0039 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 64303 - 64117
Alignment:
Q  122 actatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcct 221  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||| |||  |  |||||||||| ||||||| | |||| ||| | |||| |||||||||    
T  64303 actatgatgaaaatgtttacaagtgtatgattacaaagattcctttgaatctc-aatcttctatactaagaattcacacaagaacaaatcctcaaggcct 64205  T
Q  222 cttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatg 309  Q
    ||| || |  |||||||||||||| ||| ||| ||||||||| |||||| || |||| ||| |||||  |||| || |||||| ||||    
T  64204 cttaaatttggacagccacaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactctaagaattcgtctttgatatg 64117  T

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Target: scaffold0039; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 66064 - 66250
Alignment:
Q  122 actatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcct 221  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||| |||  |  |||||||||| ||||||| | |||| ||| | |||| |||||||||    
T  66064 actatgatgaaaatgtttacaagtgtatgattacaaagattcctttgaatctc-aatcttctatactaagaattcacacaagaacaaatcctcaaggcct 66162  T
Q  222 cttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatg 309  Q
    ||| || |  |||||||||||||| ||| ||| ||||||||| |||||| || |||| ||| |||||  |||| || |||||| ||||    
T  66163 cttaaatttggacagccacaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactctaagaattcgtctttgatatg 66250  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 4007172 - 4007067
Alignment:
Q  108 ttctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatcc 207  Q
    ||||||| | ||||||||||||||||||||||||| |||||| |||||||||| |||||| || || ||||||||||| ||||  ||| |||| ||||||    
T  4007172 ttctacgagcttccactatgatgaaaatgtttacaagtgtatgattacaaagattccttc-aatttctaatcttctatgctaaacaatcacacaagatcc 4007074  T
Q  208 aatcttc 214  Q
    |||||||    
T  4007073 aatcttc 4007067  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 4012564 - 4012459
Alignment:
Q  108 ttctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatcc 207  Q
    ||||||| | ||||||||||||||||||||||||| |||||| |||||||||| |||||| || || ||||||||||| ||||  ||| |||| ||||||    
T  4012564 ttctacgagcttccactatgatgaaaatgtttacaagtgtatgattacaaagattccttc-aatttctaatcttctatgctaaacaatcacacaagatcc 4012466  T
Q  208 aatcttc 214  Q
    |||||||    
T  4012465 aatcttc 4012459  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 14616345 - 14616523
Alignment:
Q  131 aaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaagtc 230  Q
    |||||||||||| |||||| |||||||||| ||||| ||  |   ||||||||||  |||  ||| ||| || ||| |||||| |||  |||||||| ||    
T  14616345 aaaatgtttacaagtgtataattacaaagactcctttgat-tcccaatcttctatgttaatcaatcacaatatatctaatctttaagctctcttgaaatc 14616443  T
Q  231 agacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgc 310  Q
    ||||||||||||||| ||  ||| ||||| ||| || |||||| |||||||| ||||||||||||||  |||||||||||    
T  14616444 agacagccacaaggtctttgaatctcaagtttgcatacaatcctttgatcttctactccgagaaatcgcctttgctatgc 14616523  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 14616087 - 14616193
Alignment:
Q  204 atccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttcttt 303  Q
    |||||||||| |||  |||||||| |||||||||||| |||| ||  ||| ||||| ||| ||||||||| |||||||| |||||||||||||| |||||    
T  14616087 atccaatctttaagctctcttgaaatcagacagccacgaggtctttgaatctcaagtttgcatgcaatcctttgatcttctactccgagaaatcgtcttt 14616186  T
Q  304 gctatgc 310  Q
    | |||||    
T  14616187 gatatgc 14616193  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 23469602 - 23469447
Alignment:
Q  118 ttccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaag 217  Q
    |||| ||||||||||||||| |||| |||||| |||||||||| || |||||     ||||||||||| ||||| ||| ||||  ||||||||||| |||    
T  23469602 ttccgctatgatgaaaatgtctacaagtgtataattacaaagattcattcgattcattaatcttctatgctaagcaatcacacacgatccaatctttaag 23469503  T
Q  218 gcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcc 273  Q
     ||||||||| || |||| ||||| ||| ||| ||| ||||||||  |||||||||    
T  23469502 acctcttgaaatcggacaaccacatggtcttcgaatctcaagctttcatgcaatcc 23469447  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 310
Target Start/End: Complemental strand, 17713873 - 17713694
Alignment:
Q  126 tgatgaaaatgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcctcttg 225  Q
    |||| |||||||||||| |||||| |||||||||| ||||| ||  |   ||||||||||  |||  || ||||||| |||||||||| |||| ||||||    
T  17713873 tgattaaaatgtttacaagtgtataattacaaagactcctttgat-tcccaatcttctatgttaatcaagtacactatatccaatctttaaggtctcttg 17713775  T
Q  226 aagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatcccttgatcttatactccgagaaatcttctttgctatgc 310  Q
    || ||||    |||| |||| ||  ||| ||||| ||| ||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  17713774 aaatcag----ccacgaggtctttgaatctcaagtttgcatgcaatcctttgatcttttactccaagaaatcgtctttgctatgc 17713694  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 23909769 - 23909871
Alignment:
Q  176 aatcttctattctaagaaattacactagatccaatcttcaaggcctcttgaagtcagacagccacaaggttttcaaatttcaagcttgtatgcaatccct 275  Q
    |||||||||| ||||| ||| |||| |||| ||||||||||| |||||| || |  |||| ||||| | | ||  ||| ||||||||| |||||||||||    
T  23909769 aatcttctatgctaagcaatcacacaagattcaatcttcaagacctcttaaaattggacaaccacatgatctttgaatctcaagcttgcatgcaatccct 23909868  T
Q  276 tga 278  Q
    |||    
T  23909869 tga 23909871  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 16884407 - 16884360
Alignment:
Q  112 acgggattccactatgatgaaaatgtttacaggtgtattattacaaag 159  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  16884407 acgggcttccactatgatgaaaatgtttacaagtgtataattacaaag 16884360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 17051637 - 17051698
Alignment:
Q  108 ttctacgggattccactatgatgaaaatgtttacaggtgtattattacaaagaatccttcga 169  Q
    ||||| ||| |||||||||| |||||||||||||| | |||| |||| ||||| ||||||||    
T  17051637 ttctatgggcttccactatgttgaaaatgtttacaagggtatgattataaagattccttcga 17051698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 21487138 - 21487262
Alignment:
Q  122 actatgatgaaaa-tgtttacaggtgtattattacaaagaatccttcgaaattataatcttctattctaagaaattacactagatccaatcttcaaggcc 220  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||||| ||        | |||||| ||||||||| |||  |||||||||||| ||| ||    
T  21487138 actatgatgaaaaatgtttacaagtgtatgattacaaagattccttgga--------ttttctatgctaagaaatcacagaagatccaatcttaaagacc 21487229  T
Q  221 tcttgaagtcagacagccacaaggttttcaaat 253  Q
    ||||||| |  |||| ||| |||||||||||||    
T  21487230 tcttgaaattggacacccataaggttttcaaat 21487262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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