View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20622_low_8 (Length: 250)
Name: NF20622_low_8
Description: NF20622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20622_low_8 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 47895395 - 47895159
Alignment:
| Q |
14 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacataaactttatagtatttcgaaattcaagtga |
113 |
Q |
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| T |
47895395 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacatgaactttatagtagttcgaaattcaagtga |
47895296 |
T |
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| Q |
114 |
aatcaatatatgacaagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
213 |
Q |
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| T |
47895295 |
aatcaatatatgacgagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
47895196 |
T |
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| Q |
214 |
ttccttttagagccatatcattcttgatcatcttatt |
250 |
Q |
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| T |
47895195 |
ttccttttagagccatatcattcttgatcatcttatt |
47895159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 31214151 - 31214387
Alignment:
| Q |
14 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacataaactttatagtatttcgaaattcaagtga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
31214151 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacatgaactttatattagttcgaaattcaagtga |
31214250 |
T |
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| Q |
114 |
aatcaatatatgacaagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
213 |
Q |
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| T |
31214251 |
aatcaatatatgacaagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
31214350 |
T |
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| Q |
214 |
ttccttttagagccatatcattcttgatcatcttatt |
250 |
Q |
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| T |
31214351 |
ttccttttagagccatatcattcttgatcatcttatt |
31214387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 31219906 - 31220142
Alignment:
| Q |
14 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacataaactttatagtatttcgaaattcaagtga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
31219906 |
agaagaacaacgaatcattcatatctactgagaacagaagtagcagtaagagagagacaaccggaaacatgaactttatattagttcgaaattcaagtga |
31220005 |
T |
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| Q |
114 |
aatcaatatatgacaagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
213 |
Q |
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| T |
31220006 |
aatcaatatatgacaagcaaagccaaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaat |
31220105 |
T |
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| Q |
214 |
ttccttttagagccatatcattcttgatcatcttatt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31220106 |
ttccttttagagccatatcattcttgatcatcttatt |
31220142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 22984910 - 22985013
Alignment:
| Q |
138 |
aaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattct |
237 |
Q |
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|||||||||||||||| |||||||||||| || | ||||| |||||||| || |||||||||| ||| |||||| ||||||||||| |||||||| |
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| T |
22984910 |
aaagattatatcttacattggatttcctgaggcaagatgttagatggaaa-attgcaagctcagcctcatccaaatttgtttttagagccaaatcattct |
22985008 |
T |
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| Q |
238 |
tgatc |
242 |
Q |
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||||| |
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| T |
22985009 |
tgatc |
22985013 |
T |
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