View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20623_high_1 (Length: 681)

Name: NF20623_high_1
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20623_high_1
NF20623_high_1
[»] chr1 (26 HSPs)
chr1 (20-208)||(19092996-19093188)
chr1 (523-665)||(18180226-18180362)
chr1 (526-666)||(47541527-47541661)
chr1 (523-666)||(19895406-19895543)
chr1 (523-649)||(9880490-9880610)
chr1 (523-655)||(5683519-5683645)
chr1 (577-666)||(9880737-9880826)
chr1 (523-655)||(31436341-31436467)
chr1 (525-666)||(18179887-18180022)
chr1 (523-654)||(5683167-5683292)
chr1 (579-653)||(6751313-6751387)
chr1 (523-655)||(3591295-3591421)
chr1 (577-665)||(48155227-48155315)
chr1 (578-634)||(50359418-50359474)
chr1 (579-653)||(5172801-5172875)
chr1 (577-654)||(6751101-6751178)
chr1 (586-647)||(47541790-47541851)
chr1 (583-655)||(4288398-4288470)
chr1 (523-666)||(42723202-42723343)
chr1 (579-655)||(50359181-50359256)
chr1 (579-654)||(19895759-19895834)
chr1 (523-654)||(19976170-19976295)
chr1 (579-631)||(48155029-48155081)
chr1 (427-456)||(18470477-18470506)
chr1 (224-257)||(19093216-19093249)
chr1 (586-634)||(45664750-45664798)
[»] chr8 (21 HSPs)
chr8 (523-666)||(26997816-26997953)
chr8 (523-666)||(6297468-6297605)
chr8 (523-654)||(9800302-9800427)
chr8 (523-655)||(10047485-10047610)
chr8 (526-666)||(6297982-6298116)
chr8 (523-666)||(9800045-9800182)
chr8 (523-655)||(13315208-13315334)
chr8 (523-666)||(7344803-7344940)
chr8 (579-666)||(16662224-16662311)
chr8 (579-666)||(21006069-21006156)
chr8 (579-653)||(6297822-6297896)
chr8 (579-666)||(39234892-39234979)
chr8 (523-655)||(16662430-16662555)
chr8 (579-655)||(12489284-12489360)
chr8 (523-634)||(17914203-17914308)
chr8 (577-653)||(26243355-26243431)
chr8 (587-655)||(44024289-44024357)
chr8 (579-654)||(17915466-17915541)
chr8 (580-666)||(21005779-21005865)
chr8 (577-634)||(10047857-10047914)
chr8 (523-634)||(44148583-44148688)
[»] chr6 (13 HSPs)
chr6 (523-666)||(17157552-17157689)
chr6 (579-666)||(21113085-21113172)
chr6 (523-666)||(5974017-5974154)
chr6 (523-655)||(7645940-7646066)
chr6 (579-631)||(1869507-1869559)
chr6 (523-655)||(8710299-8710424)
chr6 (579-655)||(14712964-14713040)
chr6 (579-655)||(25932343-25932419)
chr6 (523-632)||(4510194-4510298)
chr6 (523-609)||(211447-211527)
chr6 (592-666)||(25932148-25932222)
chr6 (523-656)||(211678-211805)
chr6 (523-575)||(17157865-17157917)
[»] chr4 (33 HSPs)
chr4 (527-666)||(48553906-48554039)
chr4 (523-652)||(7118125-7118248)
chr4 (523-655)||(29691870-29691996)
chr4 (523-655)||(51906777-51906903)
chr4 (579-655)||(35166824-35166900)
chr4 (523-653)||(29691531-29691655)
chr4 (523-634)||(3296549-3296654)
chr4 (584-666)||(26168053-26168135)
chr4 (577-647)||(30608599-30608669)
chr4 (523-654)||(56106420-56106545)
chr4 (523-665)||(41510074-41510210)
chr4 (523-634)||(3296923-3297028)
chr4 (579-654)||(30608301-30608376)
chr4 (579-666)||(34129247-34129334)
chr4 (523-655)||(51906426-51906552)
chr4 (579-654)||(1791507-1791582)
chr4 (579-654)||(30952960-30953035)
chr4 (579-655)||(30047974-30048050)
chr4 (579-655)||(30062315-30062391)
chr4 (541-662)||(34129018-34129133)
chr4 (581-651)||(48760077-48760147)
chr4 (523-655)||(1791154-1791280)
chr4 (523-626)||(38759710-38759807)
chr4 (584-667)||(48759871-48759954)
chr4 (597-654)||(5545143-5545199)
chr4 (577-647)||(5544838-5544908)
chr4 (579-666)||(25916983-25917072)
chr4 (579-655)||(35469021-35469097)
chr4 (584-624)||(26984205-26984245)
chr4 (241-315)||(51580075-51580148)
chr4 (592-633)||(34397717-34397758)
chr4 (395-455)||(48194169-48194232)
chr4 (579-611)||(34294506-34294538)
[»] chr7 (25 HSPs)
chr7 (579-666)||(28838408-28838495)
chr7 (523-666)||(20543917-20544054)
chr7 (523-665)||(17075565-17075701)
chr7 (525-655)||(22948836-22948960)
chr7 (579-655)||(11974720-11974796)
chr7 (523-666)||(17075225-17075362)
chr7 (579-634)||(32092508-32092563)
chr7 (528-634)||(42750097-42750197)
chr7 (579-653)||(28852749-28852823)
chr7 (584-653)||(11975023-11975092)
chr7 (523-654)||(5029713-5029837)
chr7 (523-666)||(18152762-18152899)
chr7 (586-666)||(23548670-23548750)
chr7 (579-655)||(44803590-44803666)
chr7 (577-655)||(10466737-10466815)
chr7 (523-655)||(32092234-32092360)
chr7 (579-655)||(20544269-20544344)
chr7 (579-666)||(44803382-44803469)
chr7 (577-635)||(23548985-23549043)
chr7 (592-666)||(49053550-49053623)
chr7 (579-631)||(28854733-28854785)
chr7 (586-634)||(12908444-12908492)
chr7 (523-655)||(49053838-49053965)
chr7 (427-456)||(1532483-1532512)
chr7 (577-622)||(16755624-16755669)
[»] chr2 (20 HSPs)
chr2 (523-656)||(2191223-2191350)
chr2 (523-655)||(3691347-3691473)
chr2 (523-666)||(21182313-21182450)
chr2 (523-666)||(2517419-2517556)
chr2 (523-666)||(24093162-24093299)
chr2 (523-665)||(21216929-21217065)
chr2 (523-665)||(21265337-21265473)
chr2 (528-660)||(3691094-3691220)
chr2 (523-666)||(21217268-21217405)
chr2 (523-666)||(21264997-21265134)
chr2 (577-654)||(10706610-10706687)
chr2 (523-666)||(7083528-7083665)
chr2 (523-666)||(21267315-21267452)
chr2 (523-655)||(32114172-32114297)
chr2 (579-666)||(2606603-2606690)
chr2 (577-655)||(39729564-39729642)
chr2 (577-655)||(24093514-24093592)
chr2 (577-655)||(32860868-32860946)
chr2 (579-634)||(32114450-32114505)
chr2 (374-415)||(6739634-6739675)
[»] chr5 (24 HSPs)
chr5 (523-666)||(31588293-31588431)
chr5 (523-654)||(87220-87345)
chr5 (523-666)||(16284280-16284417)
chr5 (577-655)||(18339127-18339205)
chr5 (523-655)||(18999598-18999724)
chr5 (523-655)||(31176513-31176639)
chr5 (523-666)||(3935641-3935778)
chr5 (579-655)||(35373504-35373580)
chr5 (579-655)||(35383296-35383372)
chr5 (523-649)||(8750324-8750444)
chr5 (577-655)||(13987336-13987415)
chr5 (523-655)||(8648023-8648149)
chr5 (523-635)||(18999372-18999478)
chr5 (523-666)||(30415431-30415567)
chr5 (577-654)||(15978444-15978519)
chr5 (584-654)||(3935451-3935518)
chr5 (579-655)||(38834737-38834812)
chr5 (576-655)||(3406818-3406897)
chr5 (577-631)||(3406513-3406567)
chr5 (589-655)||(29751724-29751789)
chr5 (589-655)||(29752390-29752455)
chr5 (579-634)||(8750066-8750121)
chr5 (523-566)||(29750883-29750926)
chr5 (579-629)||(1650060-1650110)
[»] scaffold0009 (2 HSPs)
scaffold0009 (523-666)||(108069-108206)
scaffold0009 (523-666)||(107728-107865)
[»] chr3 (23 HSPs)
chr3 (523-655)||(22814302-22814428)
chr3 (523-634)||(51471341-51471446)
chr3 (579-655)||(9217876-9217952)
chr3 (523-666)||(25770327-25770464)
chr3 (590-666)||(26741251-26741327)
chr3 (579-655)||(44504148-44504224)
chr3 (523-653)||(50732231-50732355)
chr3 (523-653)||(50780500-50780624)
chr3 (526-631)||(44504368-44504467)
chr3 (523-655)||(37172434-37172560)
chr3 (523-666)||(9218461-9218597)
chr3 (523-654)||(13637739-13637864)
chr3 (579-655)||(27013465-27013541)
chr3 (523-666)||(43933446-43933583)
chr3 (579-634)||(37172137-37172192)
chr3 (523-655)||(38485703-38485828)
chr3 (580-633)||(43933708-43933761)
chr3 (579-624)||(51755903-51755948)
chr3 (579-655)||(13637531-13637607)
chr3 (579-655)||(34743428-34743504)
chr3 (523-575)||(45728349-45728401)
chr3 (523-609)||(132063-132143)
chr3 (427-456)||(51265668-51265697)
[»] scaffold0063 (2 HSPs)
scaffold0063 (523-666)||(34798-34935)
scaffold0063 (523-654)||(35151-35276)
[»] scaffold0933 (1 HSPs)
scaffold0933 (579-666)||(547-634)
[»] scaffold0384 (1 HSPs)
scaffold0384 (235-318)||(7342-7424)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 19092996 - 19093188
Alignment:
Q  20 taaactacctcttaacaaaagcactgttgaagatgctcttactatcaaattagtgttcgacatattccttcatggacatgtatggataaaatatgatag- 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||     
T  19092996 taaactacctcttaacaaaagcactattgaagatgctcttactatcaaattagtggtcgacatattccttcatggacatgtatggataaaatttgataga 19093095  T
Q  119 ----agtcaacatattccgtagtgttagggacatttgtttagtttaaccaaaaaataagccaaattacttcagtggtcttaaagttatttgatt 208  Q
        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  19093096 gtcaagtcaacatattccgtagtgttagggacatttgtttagtttgaccaaaaaataagccaaataacttcagtggtctt-aagttatttgatt 19093188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 523 - 665
Target Start/End: Complemental strand, 18180362 - 18180226
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| || ||  ||||| || | |||||||||||||| ||||||||      | ||||||||||||||||||||||| || ||||||||||||    
T  18180362 atatgtttttaatctttatattttgcgccactttgaagaatagtccatacatt------ttattaaatgtttttaaaatcctcatattttatctccgtta 18180269  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    |||||||||||||||| ||||||||||||||||  ||||||||    
T  18180268 tcaaaattagtcagtggtgttaattctctaacggaatgctgat 18180226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 666
Target Start/End: Original strand, 47541527 - 47541661
Alignment:
Q  526 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 625  Q
    |||||||||||||| ||||||| |||||||||||||||||| | ||      |||||||||||||||||||||||||||||||| |||| | | ||||||    
T  47541527 tgtttttagtccttacattttatgtccctttgaagaatagtcccta------tatttcattaaatgtttttaaaatcctcacattttatattcattatca 47541620  T
Q  626 aaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||| ||  || ||||||||||||||||  |||||||||    
T  47541621 aaattaatccctgttgttaattctctaacggaatgctgatg 47541661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 19895406 - 19895543
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| ||||||| |  | ||||||||||||| |||||||| |      ||||||||||||||||| |||||||| ||||||||||||    
T  19895406 atatgtttttagtccttacattttatgctcgtttgaagaatagtccatacattta------attaaatgtttttaaaaccctcacattttatctccgtta 19895499  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  | ||||||||||| |||||  |||||||||    
T  19895500 tcaaaattagtctatactgttaattctttaacggaatgctgatg 19895543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 523 - 649
Target Start/End: Original strand, 9880490 - 9880610
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| | ||||||||||||| |||   ||||||      |||||||||||||||||||||||||||| |||||| |||||    
T  9880490 atatgtttttagtccttacattttgcatccctttgaagaaaagtctctacatt------tcattaaatgtttttaaaatcctcacattttatcttcgtta 9880583  T
Q  623 tcaaaattagtcagtgctgttaattct 649  Q
    ||||||||||||| || ||||||||||    
T  9880584 tcaaaattagtcactgttgttaattct 9880610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 5683645 - 5683519
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||||||||  ||||||||||||| | ||||||      ||||||||| ||||||||||||||  || ||||||||| ||    
T  5683645 atatgtttttagtccttatattttacgtctttttgaagaatagtccctacatt------tcattaaatatttttaaaatcctcgtattttatctccggta 5683552  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||| ||||||||||| |||||||    
T  5683551 tcaaaattagtcactgctgttaattttctaacg 5683519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 577 - 666
Target Start/End: Complemental strand, 9880826 - 9880737
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||||||||||||||||  |||||||||    
T  9880826 atattttattaaatgtttttaaaattctcacattttatctctgttatcaaaattagtccctgctgttaattctctaacggaatgctgatg 9880737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 31436467 - 31436341
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||| ||||||||||| ||||||  |||| |||||||||||||     || || ||||| ||||||||||||||||||  |||||| ||||||||||||    
T  31436467 atatgattttagtccttacattttgtgtccttttgaagaatagt-----cacta-tattttattaaatgtttttaaaattatcacattttatctccgtta 31436374  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  |||||||||||||||||||    
T  31436373 tcaaaattagtctctgctgttaattctctaacg 31436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 525 - 666
Target Start/End: Original strand, 18179887 - 18180022
Alignment:
Q  525 atgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatc 624  Q
    ||||||||||||||| |||||| |  ||||||||| |||||| | ||      ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18179887 atgtttttagtccttacattttgcacccctttgaaaaatagtcctta------tatttcattaattgtttttaaaatcctcacattttatctccgttatc 18179980  T
Q  625 aaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||  | ||| ||||| |||||||  |||||||||    
T  18179981 aaaattagtctctactgctaattttctaacggaatgctgatg 18180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 654
Target Start/End: Original strand, 5683167 - 5683292
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| ||||| |||||| |||| ||||||| |||||| | ||||||      ||||||||||| |||||||||||||||| |||||| | |||    
T  5683167 atatgtttttaatccttacattttgcgtctctttgaaaaatagtccctacatt------tcattaaatgtatttaaaatcctcacattttatcttcatta 5683260  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||  |||||||| |||||||||    
T  5683261 tcaaaattagtccctgctgttatttctctaac 5683292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 579 - 653
Target Start/End: Complemental strand, 6751387 - 6751313
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||    
T  6751387 atttcattaaatttttttaaaatcctcacattttatctttgttatcaaaattagtctctgctgttaattctctaa 6751313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 3591421 - 3591295
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| ||  | ||||||||||||| ||||||||      | |||||||||||||||||||||||||| |||||||| |||    
T  3591421 atatatttttagtccttacattttgcgctcatttgaagaatagtccatacatt------ttattaaatgtttttaaaatcctcacattttatctccatta 3591328  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    | ||||||||||  |||||| |||| |||||||    
T  3591327 taaaaattagtccctgctgtaaattatctaacg 3591295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 665
Target Start/End: Complemental strand, 48155315 - 48155227
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    |||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||||  || |||||||||| |||||  ||||||||    
T  48155315 atatttcattaaatgtttttaaaatcttcacattttatctatgttatcaaaattagtccttgttgttaattctttaacggaatgctgat 48155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 50359474 - 50359418
Alignment:
Q  578 tatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50359474 tatttcattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtc 50359418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 579 - 653
Target Start/End: Original strand, 5172801 - 5172875
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||  || ||||||||||||||    
T  5172801 atttcattaaatgtttttaaaatccttacattttatctacgttatcaaatttagtccttgttgttaattctctaa 5172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 577 - 654
Target Start/End: Original strand, 6751101 - 6751178
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||   | |||||||||||||||    
T  6751101 atatttcattaaatgttttaaaaatcatcgcattttatctccgttatcaaaattagtccccgatgttaattctctaac 6751178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 586 - 647
Target Start/End: Complemental strand, 47541851 - 47541790
Alignment:
Q  586 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 647  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  47541851 taaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttaatt 47541790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 655
Target Start/End: Complemental strand, 4288470 - 4288398
Alignment:
Q  583 cattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||| ||  ||||||||||||| |||||    
T  4288470 cattaaatgtttttaaaatcctcacattttatattcgttatcaaaattaatccatgctgttaattctttaacg 4288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 42723343 - 42723202
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| |||||  ||||| ||  ||||| ||||||| |||||| |||  || || |||||||||||||||||||||||||| |||| |||||||    
T  42723343 atatgtttttaatccttatattttgcgctcctttaaagaataattcatatatt--taatttattaaatgtttttaaaatcctcacattttatatccgtta 42723246  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
     ||||||||||   || |||||||| ||||| |  |||||||||    
T  42723245 gcaaaattagtttatgttgttaattatctaatggaatgctgatg 42723202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 50359181 - 50359256
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||| ||||| |||||| |||| ||||||||||||||||| |  |||||||||||||||||||    
T  50359181 atttcattaaatgttttttaaatcttcacattttatttccgttatcaaaattag-ctctgctgttaattctctaacg 50359256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 654
Target Start/End: Complemental strand, 19895834 - 19895759
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||| |||||||||||||||||| |||| || |||||| |||||||||||||||||  || |||||||||||||||    
T  19895834 attttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtctttgttgttaattctctaac 19895759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 654
Target Start/End: Original strand, 19976170 - 19976295
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| || |||||| ||   |||||||||||||||| ||      | ||| |||||||||||||||||||| ||||| |||||||  |||    
T  19976170 atatgtttttagtcgttacattttgcgcttctttgaagaatagttctta------ttttttattaaatgtttttaaaatccccacattttatctctatta 19976263  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||| ||  || |||||||| ||||||    
T  19976264 tcaaaattaatccttgttgttaattatctaac 19976295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 48155029 - 48155081
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 631  Q
    |||| ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  48155029 attttattaaatgtttttaaaatcctcatattttatctccgatatcaaaatta 48155081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Original strand, 18470477 - 18470506
Alignment:
Q  427 tggtacgaaaaaacttaaaaccaacttgtt 456  Q
    ||||||||||||||||||||||||||||||    
T  18470477 tggtacgaaaaaacttaaaaccaacttgtt 18470506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 19093216 - 19093249
Alignment:
Q  224 atcacttatgtctttacttaattgtaacaagtta 257  Q
    |||||||||||| |||||||||||||||||||||    
T  19093216 atcacttatgtccttacttaattgtaacaagtta 19093249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 586 - 634
Target Start/End: Original strand, 45664750 - 45664798
Alignment:
Q  586 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||||||||||||||||| ||||| ||  |||||||||||||| |||||    
T  45664750 taaatgtttttaaaatccccacatttttactccgttatcaaaaatagtc 45664798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 26997953 - 26997816
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||| ||| |||||| ||||| ||||||||||||| ||||||||      ||||||| | |||||||||||||||||| ||||||||||||    
T  26997953 atatgtttttagttcttacattttgcgtccatttgaagaatagtccatacatt------tcattaattatttttaaaatcctcacattttatctccgtta 26997860  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  |||||||||||||||||||  |||||||||    
T  26997859 tcaaaattagtccctgctgttaattctctaacggaatgctgatg 26997816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 6297468 - 6297605
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||| |||||||||| |||||| || |||||||||||||||||| ||||||      |||||||||||||||||||||||||||| || |||| ||||    
T  6297468 atatgtctttagtccttacattttgcgcccctttgaagaatagttcctacatt------tcattaaatgtttttaaaatcctcacattttctctctgtta 6297561  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  |||||||||||||| ||||  |||||||||    
T  6297562 tcaaaattagtccttgctgttaattctccaacggaatgctgatg 6297605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 9800427 - 9800302
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| ||||| ||||||||||||| || |||||||||||||||| ||||      ||||||||||||||||||||||||||| |||| |||||| |||||    
T  9800427 atatatttttggtccttgcattttgcgcccctttgaagaatagtccata------tatttcattaaatgtttttaaaatccttacattttatcttcgtta 9800334  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    |||||||||||   ||||||||||||||||||    
T  9800333 tcaaaattagtttatgctgttaattctctaac 9800302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 10047485 - 10047610
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| ||||| |||||| || || ||||||||||||| | ||||||       ||||||||||||||||||| ||||||| ||||||||||||    
T  10047485 atatgtttttaatccttacattttgcgcccttttgaagaatagtccctacatt-------cattaaatgtttttaaaattctcacattttatctccgtta 10047577  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  |||||||||||||||||||    
T  10047578 tcaaaattagtccatgctgttaattctctaacg 10047610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 666
Target Start/End: Complemental strand, 6298116 - 6297982
Alignment:
Q  526 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 625  Q
    |||||||||| ||| |||||| | ||||||||||||||||| | ||||||      |||||||||||||||||||||||||||| |||| ||||||||||    
T  6298116 tgtttttagtgcttacattttgcttccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatttccgttatca 6298023  T
Q  626 aaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||  |  ||||||||||||||||  |||||||||    
T  6298022 aaattagtccctattgttaattctctaacggaatgctgatg 6297982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 9800045 - 9800182
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| || | |||||||||||| | | ||||||      | |||||||||||||||||||||||||| | ||||||||||    
T  9800045 atatgtttttagtccttagattttgcgcctctttgaagaataatccttacatt------ttattaaatgtttttaaaatcctcacatttcatctccgtta 9800138  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  |||||||||||||||||||  |||||||||    
T  9800139 tcaaaattagtctttgctgttaattctctaacggaatgctgatg 9800182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 13315208 - 13315334
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || || ||| ||||||||| | ||||||      ||||||||||||||||||||| |||||| ||||||| ||||    
T  13315208 atatgtttttagtccttacattttgcgcccatttaaagaatagtccctacatt------tcattaaatgtttttaaaatcatcacattttatctctgtta 13315301  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||| || | |||||||||||||||||    
T  13315302 tcaaaattagccattcctgttaattctctaacg 13315334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 7344940 - 7344803
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| ||||||  | |||||||||||||| | ||||||||      | |||| |||||||||||||||||| || |||| |||||||    
T  7344940 atatgtttttagtccttacattttgtgcccctttgaagaataatccatacatt------ttattatatgtttttaaaatcctcatattttatgtccgtta 7344847  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||| ||| | || ||||||||||||||| |||||||||    
T  7344846 tcaaaattactcattactattaattctctaacgaaatgctgatg 7344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 16662224 - 16662311
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||  | |||||||||||||||||| |||||||||    
T  16662224 atttcattaaatgtttttaaaattctcacattttatctctgttattaaaattagtccctactgttaattctctaacgaaatgctgatg 16662311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 21006156 - 21006069
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||  ||  ||||||||||||||||| || |||||||||    
T  21006156 attttattaaatgtttttaaaatcctcacattttatctccgttatcaaaattgatccctgctgttaattctctaatgaaatgctgatg 21006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 579 - 653
Target Start/End: Complemental strand, 6297896 - 6297822
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||| |||||||||    
T  6297896 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttgattctctaa 6297822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 39234892 - 39234979
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||| ||||||| |||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  39234892 attttattaaatattttaaaaattctcacattttatctcagttatcaaaattagtcaatgctgttaattctctaacggaatgctgatg 39234979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 16662555 - 16662430
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| ||  | ||||||||||||||| ||||||      |||||||||||||||||||| |||| || |||||||||||     
T  16662555 atatgtttttagtccttacattttgcgctcttttgaagaatagttcctacatt------tcattaaatgtttttaaaattctcatat-ttatctccgttc 16662463  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||| ||  || ||||||||||||||||    
T  16662462 tcaaaattaatccctgttgttaattctctaacg 16662430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 12489284 - 12489360
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| |||||||||||||| ||| ||||||  ||||||||||||||||  |||||||||||||||||||    
T  12489284 atttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgctgttaattctctaacg 12489360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 634
Target Start/End: Original strand, 17914203 - 17914308
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||| |||| || |||||| |||| |||||||||||||| | ||||||      | |||||||||||||||||||||||||| ||||||| ||||    
T  17914203 atatgttttaagtctttacattttgcgtctctttgaagaatagtccctacatt------ttattaaatgtttttaaaatcctcacattttatctctgtta 17914296  T
Q  623 tcaaaattagtc 634  Q
    ||||||||||||    
T  17914297 tcaaaattagtc 17914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 653
Target Start/End: Complemental strand, 26243431 - 26243355
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||   | ||||||||||||||    
T  26243431 atatttcattaaatgtttttaaaatcctcacattttatctccattatcaaaatttgtccacggtgttaattctctaa 26243355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 587 - 655
Target Start/End: Original strand, 44024289 - 44024357
Alignment:
Q  587 aaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||| || ||||||||||||||||    
T  44024289 aaatgtttttaaaatcatcacattttatccccgttatcaaaattagtcaatgttgttaattctctaacg 44024357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 579 - 654
Target Start/End: Complemental strand, 17915541 - 17915466
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||||| ||||    
T  17915541 attttattaaatgttttttaaatcctcacattttatctctgttatcaaaattagtctttgctgttaattctttaac 17915466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 580 - 666
Target Start/End: Original strand, 21005779 - 21005865
Alignment:
Q  580 tttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||| ||||||||||| ||| || ||||||||||||||||||||| ||  | |||||||||||||||||| ||| |||||    
T  21005779 tttcattaaatttttttaaaatcttcatattttatctccgttatcaaaattattctttcctgttaattctctaacgaaatgttgatg 21005865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 634
Target Start/End: Complemental strand, 10047914 - 10047857
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||| ||||||||| ||||||||||  ||| || ||||||||||||||||||||||||    
T  10047914 atatatcattaaatatttttaaaattttcatattttatctccgttatcaaaattagtc 10047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 634
Target Start/End: Original strand, 44148583 - 44148688
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||| | |||||||||  | ||||||||||||| | ||||||      | | |||| ||||||||||||||||||| ||  ||||||||    
T  44148583 atatgtttttagtccctacattttacgctcttttgaagaatagtccctacatt------ttaataaacgtttttaaaatcctcacatttttactccgtta 44148676  T
Q  623 tcaaaattagtc 634  Q
    |||||| |||||    
T  44148677 tcaaaaatagtc 44148688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 17157552 - 17157689
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||| ||| ||||||||| | | |||||||||||| ||||||||      ||||||||| |||||||||||||||||| |||||||  |||    
T  17157552 atatgtttttagttcttacattttacgcctcattgaagaatagtccatacatt------tcattaaatatttttaaaatcctcacattttatctctatta 17157645  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  17157646 tcaaaattagtcactgctgttaattctctaacgaaatgctgatg 17157689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 21113085 - 21113172
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||  |||||||||||||||||||  |||||||||    
T  21113085 atttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtctctgctgttaattctctaacggaatgctgatg 21113172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 5974017 - 5974154
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||| ||||| |||| |||||||    
T  5974017 atatgtttttagtccttatattttgcacccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatccccacattttatttccgtta 5974110  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    | ||||||||||  || ||||||||||||||||  |||||||||    
T  5974111 ttaaaattagtccatgttgttaattctctaacggaatgctgatg 5974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 7646066 - 7645940
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| ||||||  |  ||||||||||||||| | ||||||      ||| |||||||||| ||||| ||||||| ||||||||||||    
T  7646066 atatgtttttagtccttacattttgtgctcctttgaagaatagtccttacatt------tcaataaatgttttaaaaattctcacattttatctccgtta 7645973  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  ||||||||||| |||||||    
T  7645972 tcaaaattagtccctgctgttaattttctaacg 7645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 1869507 - 1869559
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 631  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1869507 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 1869559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 8710424 - 8710299
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||| ||||| |||| | |||||    
T  8710424 atatgtttttagtccttatattttgcacccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatccccacattttat-ttcgtta 8710332  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    | ||||||||||  || ||||||||||||||||    
T  8710331 ttaaaattagtccatgttgttaattctctaacg 8710299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 14713040 - 14712964
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||  |||| |||| || ||||||| ||||||||||||||||  |||||||||||||||||||    
T  14713040 atttcattaaatgttttagaaatgctcatattttatctctgttatcaaaattagtctctgctgttaattctctaacg 14712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 25932419 - 25932343
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||| || |||||| ||||||| ||||||| ||||||||||||||||||||||||  ||| |||||||||||||||    
T  25932419 atttcgttcaatgttattaaaattctcacattttatctccgttatcaaaattagtctctgccgttaattctctaacg 25932343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 632
Target Start/End: Original strand, 4510194 - 4510298
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcct-cacatcttatctccgtt 621  Q
    ||||||||||||||||| ||||||||| |  ||||||||||||| | ||||||      ||||||||||||||||||||||| || || ||||||| |||    
T  4510194 atatgtttttagtccttacattttacgcctatttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctccatattttatctcggtt 4510287  T
Q  622 atcaaaattag 632  Q
    |||||||||||    
T  4510288 atcaaaattag 4510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 609
Target Start/End: Original strand, 211447 - 211527
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacat 609  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | |||      ||||||||||||| |||||||||||||||||    
T  211447 atatgtttttagtccttacattttgcgcccctttgaagaatagtccgtac------atttcattaaatgattttaaaatcctcacat 211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 666
Target Start/End: Original strand, 25932148 - 25932222
Alignment:
Q  592 tttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||  ||| ||||||||||||||||||||||||  |||| ||| ||||||||||  |||||||||    
T  25932148 tttttaaaatccttgcattttatctccgttatcaaaattagtccatgctattatttctctaacggaatgctgatg 25932222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 656
Target Start/End: Complemental strand, 211805 - 211678
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgttttt-aaaatcctcacatcttatctccgtt 621  Q
    ||||||||||| ||||| |||||| || |  ||||||||||||| | ||||||      ||||||||| ||||| |||||| |||||| |||||||| ||    
T  211805 atatgtttttaatccttacattttgcgcctatttgaagaatagtccctacatt------tcattaaatattttttaaaatcttcacattttatctccatt 211712  T
Q  622 atcaaaattagtcagtgctgttaattctctaacga 656  Q
    ||| |||||| ||  | ||||||||||||||||||    
T  211711 atc-aaattaatccctactgttaattctctaacga 211678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 17157917 - 17157865
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacatt 575  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||    
T  17157917 atatgtttttagtccttacattttgcgccactttgaagaatagtccctacatt 17157865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 527 - 666
Target Start/End: Original strand, 48553906 - 48554039
Alignment:
Q  527 gtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaa 626  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||||      ||||||||  |||||||||||||||||| ||||||||||||||||    
T  48553906 gtttttagtccttacattttgcgtccctttgaagaatagtccatacatt------tcattaaacctttttaaaatcctcacattttatctccgttatcaa 48553999  T
Q  627 aattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||| || |||||||||| |||||  |||||||||    
T  48554000 aattagtcattgttgttaattctttaacggaatgctgatg 48554039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 523 - 652
Target Start/End: Complemental strand, 7118248 - 7118125
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || |||||||||||||||| ||||||||      |||||||||||||||||||| |||| || |||||||| |||    
T  7118248 atatgtttttagtccttacattttgcgcccctttgaagaatagtccatacatt------tcattaaatgtttttaaaattctcaaattttatctccatta 7118155  T
Q  623 tcaaaattagtcagtgctgttaattctcta 652  Q
    ||||||||||||  ||||||||||||||||    
T  7118154 tcaaaattagtccatgctgttaattctcta 7118125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 29691996 - 29691870
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| ||||||||||||  |||||||| |||||||      || |||||||||||||| |||||||||||||||||| ||||||| ||||    
T  29691996 atatgtttttagtctttgcattttacgctcctttgaataatagtt------tttatatttcattaaatatttttaaaatcctcacattttatctctgtta 29691903  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  ||| |||||||||||||||    
T  29691902 tcaaaattagtccatgcggttaattctctaacg 29691870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 51906903 - 51906777
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||| | |||||       |||||||||||||||||||||||||||| ||||||||||||    
T  51906903 atatgtttttagtccttacattttgcgctcctttgaagaatagtccctacatc------tcattaaatgtttttaaaatcctcacattttatctccgtta 51906810  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||   |||||||||||||||||||    
T  51906809 tcaaaattagtttctgctgttaattctctaacg 51906777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 35166900 - 35166824
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  35166900 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacg 35166824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 523 - 653
Target Start/End: Original strand, 29691531 - 29691655
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| | ||| ||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  29691531 atatgtttttagtccttatattttgcatccatttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 29691624  T
Q  623 tcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||  | |||||||||||||||    
T  29691625 tcaaaattagtctctactgttaattctctaa 29691655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 634
Target Start/End: Original strand, 3296549 - 3296654
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || |||||||||||||| | | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  3296549 atatgtttttagtccttacattttgcgcccctttgaagaatattccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 3296642  T
Q  623 tcaaaattagtc 634  Q
    ||||||||||||    
T  3296643 tcaaaattagtc 3296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 584 - 666
Target Start/End: Original strand, 26168053 - 26168135
Alignment:
Q  584 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||  |||||||||    
T  26168053 attaaatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacggaatgctgatg 26168135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 577 - 647
Target Start/End: Complemental strand, 30608669 - 30608599
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 647  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  30608669 atatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcactgttgttaatt 30608599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 56106545 - 56106420
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| || ||||||  | |||||||||||||||||| ||      ||||| |||||||||||||||||||||| ||| ||||||||||||    
T  56106545 atatgtttttagtctttacattttgtgcccctttgaagaatagttccta------tattttattaaatgtttttaaaatcctctcattttatctccgtta 56106452  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    | ||||||||||  || |||||||||||||||    
T  56106451 ttaaaattagtccctgatgttaattctctaac 56106420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 523 - 665
Target Start/End: Original strand, 41510074 - 41510210
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||| ||||| |||||| || |||||||||||||||| | ||||||      | ||||||| ||| ||||||||||| || |||||||| |||    
T  41510074 atatatttttaatccttacattttgcgcccctttgaagaatagtccctacatt------ttattaaatatttctaaaatcctcatattttatctccctta 41510167  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    ||||||||||||| || ||||||||||||||||| ||||||||    
T  41510168 tcaaaattagtcactgttgttaattctctaacgaaatgctgat 41510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 634
Target Start/End: Complemental strand, 3297028 - 3296923
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| || |||||||||||||||| | ||| ||      ||||||||||||||||||||||| |||| ||||||||||||    
T  3297028 atatatttttagtccttacattttgcgaccctttgaagaatagtccctacgtt------tcattaaatgtttttaaaatccttacattttatctccgtta 3296935  T
Q  623 tcaaaattagtc 634  Q
    ||||||||||||    
T  3296934 tcaaaattagtc 3296923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 654
Target Start/End: Original strand, 30608301 - 30608376
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||    
T  30608301 atttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctattaattctctaac 30608376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 34129334 - 34129247
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||   ||||||||||||| ||||  |||||||||    
T  34129334 atttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtccaagctgttaattctccaacggaatgctgatg 34129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 51906426 - 51906552
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| || |||||| || | |||||||||||||| | ||| ||      ||||||||||||||||| |||||||||| ||||||||||||    
T  51906426 atatgtttttagtctttacattttgcgcctctttgaagaatagtccctacgtt------tcattaaatgtttttaatatcctcacattttatctccgtta 51906519  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  || |||||| ||| |||||    
T  51906520 tcaaaattagtccctgatgttaactctttaacg 51906552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 579 - 654
Target Start/End: Complemental strand, 1791582 - 1791507
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  1791582 attttattaaatgtttttaaaatctttacattttatctccgttattaaaattagtctctgctgttaattctctaac 1791507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 579 - 654
Target Start/End: Complemental strand, 30953035 - 30952960
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||  || |||||||||||||||    
T  30953035 atttcattaaatgtttttaaaatcctaacattttatctcggttattaaaattagtccttgttgttaattctctaac 30952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 30048050 - 30047974
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||  || |||||||| |||||||    
T  30048050 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacg 30047974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 30062391 - 30062315
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||  || |||||||| |||||||    
T  30062391 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacg 30062315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 662
Target Start/End: Original strand, 34129018 - 34129133
Alignment:
Q  541 cattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgct 640  Q
    |||||| ||||||||||||||||||| | ||      ||||| |||||| ||||||||||| |||| || |||||| |||||||||| ||||||  || |    
T  34129018 cattttgcgtccctttgaagaatagtcccta------tattttattaaacgtttttaaaattctcatattttatcttcgttatcaaagttagtctatgtt 34129111  T
Q  641 gttaattctctaacgagatgct 662  Q
    ||||||||||||||| ||||||    
T  34129112 gttaattctctaacgggatgct 34129133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 48760147 - 48760077
Alignment:
Q  581 ttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctct 651  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||  || ||||||||||||    
T  48760147 ttcattaaatgtttttaaaatcttcacattttatctctgttatcaaaattaatccatgttgttaattctct 48760077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 1791154 - 1791280
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| ||  |||||||  | |||||||||||||| ||||||||      |||||||||||||| |||||||||| |  ||||  | ||||    
T  1791154 atatgtttttagtcgttaaattttacacctctttgaagaatagtccatacatt------tcattaaatgttttaaaaatcctcaaactttatacctgtta 1791247  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  || ||||||||||||||||    
T  1791248 tcaaaattagtcgatgttgttaattctctaacg 1791280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 626
Target Start/End: Original strand, 38759710 - 38759807
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| ||||||||||||  ||||| || | ||||||||||||||  |||||||      ||||||||||||||||||||||||| || ||||||||||||    
T  38759710 atatttttttagtccttaaattttgcgcctctttgaagaatagtctatacatt------tcattaaatgtttttaaaatcctcaaattttatctccgtta 38759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 667
Target Start/End: Original strand, 48759871 - 48759954
Alignment:
Q  584 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatga 667  Q
    |||||||||||||||||| ||||||| ||||||| ||  |||||||||||   ||| ||||||| ||||||| |||||||||||    
T  48759871 attaaatgtttttaaaattctcacattttatctctgtcgtcaaaattagtttctgccgttaattttctaacgcgatgctgatga 48759954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 654
Target Start/End: Complemental strand, 5545199 - 5545143
Alignment:
Q  597 aaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||    
T  5545199 aaaatcctcacattttatctccgttatcaaaattagtc-ttgttgttaattctctaac 5545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 577 - 647
Target Start/End: Original strand, 5544838 - 5544908
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 647  Q
    |||||||||||||| |||||||||| ||||||| |||||||| ||||  |||||||||  | |||||||||    
T  5544838 atatttcattaaatatttttaaaattctcacattttatctcctttattcaaattagtccatactgttaatt 5544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 25917072 - 25916983
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgt--tatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||||||||||||  ||| || |||||| |||  ||| |||||||||   |||| ||||||||||||||| |||||||||    
T  25917072 atttcattaaatgtttttaaaattttcatattttatcttcgtgttatgaaaattagtgtctgcttttaattctctaacgaaatgctgatg 25916983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 35469097 - 35469021
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatctt-atctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||| |||||||||||||||| || || ||||||||||||||||||| ||  || |||||||||| |||||    
T  35469097 atttcattaaa-gtttttaaaatcctcaaatttttatctccgttatcaaaattaatccatgttgttaattctttaacg 35469021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 624
Target Start/End: Original strand, 26984205 - 26984245
Alignment:
Q  584 attaaatgtttttaaaatcctcacatcttatctccgttatc 624  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  26984205 attaaatgtttttaaaatcctcacattttatctcagttatc 26984245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 51580148 - 51580075
Alignment:
Q  241 ttaattgtaacaagttagtttttaagtaaatttttgcaccatttaggtcttttaaatatttaattgtaactttta 315  Q
    |||||||||||||||||||| |||||| | |||| | | |||||||||||||    |||||||||||||||||||    
T  51580148 ttaattgtaacaagttagttcttaagt-atttttcgtaacatttaggtctttacgttatttaattgtaactttta 51580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 633
Target Start/End: Original strand, 34397717 - 34397758
Alignment:
Q  592 tttttaaaatcctcacatcttatctccgttatcaaaattagt 633  Q
    ||||||||||||||| || |||||| ||||||||||||||||    
T  34397717 tttttaaaatcctcatattttatcttcgttatcaaaattagt 34397758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 48194232 - 48194169
Alignment:
Q  395 aacttattacagttaattaacttaaatatctt---tggtacgaaaaaacttaaaaccaacttgt 455  Q
    ||||| |||||||||| ||||||||| | | |   |||||||||||||||||||||||||||||    
T  48194232 aacttgttacagttaagtaacttaaagagcgtaagtggtacgaaaaaacttaaaaccaacttgt 48194169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 579 - 611
Target Start/End: Original strand, 34294506 - 34294538
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatct 611  Q
    |||||||||||||||||||||||| ||||||||    
T  34294506 atttcattaaatgtttttaaaatcttcacatct 34294538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 28838408 - 28838495
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  28838408 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcattggtgttaattctctaacgaaatgctgatg 28838495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 20543917 - 20544054
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| | ||| ||||||  | |||||||||||||||| | ||||||      ||||||||| ||||||||||||||| || ||||||||||||    
T  20543917 atatgtttttaattcttacattttgtgcccctttgaagaatagtccctacatt------tcattaaatttttttaaaatcctcatattttatctccgtta 20544010  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||   |||||||||||||||||||||||| |||||    
T  20544011 tcaaaattagtttctgctgttaattctctaacgagatggtgatg 20544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 523 - 665
Target Start/End: Complemental strand, 17075701 - 17075565
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  17075701 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 17075608  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    ||||||||||||  |||| ||||||||||||||  ||||||||    
T  17075607 tcaaaattagtccttgctattaattctctaacggaatgctgat 17075565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 525 - 655
Target Start/End: Complemental strand, 22948960 - 22948836
Alignment:
Q  525 atgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatc 624  Q
    ||||||||||||||| |||||| || ||||||||||||||||   ||||||      |||||||||||||||||||||||||||| ||||||||||||||    
T  22948960 atgtttttagtccttacattttgcgaccctttgaagaatagtctctacatt------tcattaaatgtttttaaaatcctcacattttatctccgttatc 22948867  T
Q  625 aaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||  |  ||||||| ||||||||    
T  22948866 aaaattagtctctattgttaatgctctaacg 22948836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 11974720 - 11974796
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||||||||||||||    
T  11974720 atttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtctttgttgttaattctctaacg 11974796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 17075225 - 17075362
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| || | |||||||||||||| | ||||||      |||||||| ||||||||||||||||||| ||||| ||||||    
T  17075225 atatgtttttagtccttatattttgcgccgctttgaagaatagtccctacatt------tcattaaaagtttttaaaatcctcacattttatccccgtta 17075318  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  17075319 acaaaattagtccttgccgttaattctttaacggaatgctgatg 17075362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 634
Target Start/End: Complemental strand, 32092563 - 32092508
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32092563 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 32092508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 634
Target Start/End: Complemental strand, 42750197 - 42750097
Alignment:
Q  528 tttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaa 627  Q
    ||||||||| || ||||||||| |||||||||||||||| | ||||||      |||||||| ||||||||||||||||||| ||||||||||||| |||    
T  42750197 tttttagtctttacattttacgcccctttgaagaatagtccctacatt------tcattaaacgtttttaaaatcctcacattttatctccgttattaaa 42750104  T
Q  628 attagtc 634  Q
    |||||||    
T  42750103 attagtc 42750097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 579 - 653
Target Start/End: Original strand, 28852749 - 28852823
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |  || ||||||||||||||    
T  28852749 atttcattaaatgtttttaaaatcctcacattttatccccgttatcaaaattagcctctgttgttaattctctaa 28852823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 653
Target Start/End: Complemental strand, 11975092 - 11975023
Alignment:
Q  584 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 653  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||  || ||||||||||||||    
T  11975092 attaaatgtttttaaaatcctcacattttatttccgttatcaaaattagtctctgttgttaattctctaa 11975023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 5029837 - 5029713
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| ||||||||| || |||||| |||| |||||||||||||| | ||      |||||||||||||||||||||| ||||||||| ||||||||| ||    
T  5029837 atatatttttagtcgttacattttgcgtctctttgaagaatagtcccta------tatttcattaaatgtttttaaa-tcctcacattttatctccgcta 5029745  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||  || |||||||| ||||||    
T  5029744 tcaaaattagtccatgttgttaattatctaac 5029713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 18152762 - 18152899
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||| ||| ||| |||||| || |||||||||||||||| | ||||||      |  ||||||||| ||||||||||||||| ||||||||||||    
T  18152762 atatgttttcagttcttacattttgcgcccctttgaagaatagtccctacatt------ttgttaaatgttcttaaaatcctcacattttatctccgtta 18152855  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||    || ||||||||||||||||  |||||||||    
T  18152856 tcaaaattagcttctgttgttaattctctaacggaatgctgatg 18152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 666
Target Start/End: Original strand, 23548670 - 23548750
Alignment:
Q  586 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||  || ||||||||||||||||  |||||||||    
T  23548670 taaatgtttttaaaatactcacattttatctctgttatcaaaattagtctttgttgttaattctctaacggaatgctgatg 23548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 44803666 - 44803590
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||| | ||| |||||||    
T  44803666 atttcattaaatgtttttaaaattctcacattttatctccgttatcaaaattagtccatgctgatcattttctaacg 44803590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 10466815 - 10466737
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||   |||| ||||||||||||||    
T  10466815 atattttattaaatgtttttaaaatcgtcacattttatctccattatcaaaattagtttatgctattaattctctaacg 10466737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 32092234 - 32092360
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | | ||||      |||||||||||||||||||||||||||| || | |  ||||    
T  32092234 atatgtttttagtccttacattttgcgcctctttgaagaatagtccctgcatt------tcattaaatgtttttaaaatcctcacattttgtgtttgtta 32092327  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  || |||||||||| |||||    
T  32092328 tcaaaattagtctttgttgttaattctataacg 32092360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 20544344 - 20544269
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||  |||| ||||||||||||||    
T  20544344 atttcattaaatgtttttaaaatc-tcacattttatcttcgttatcaaaatcagtcgttgctattaattctctaacg 20544269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 44803382 - 44803469
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||| ||||||| ||||||||||||| | || ||||||| | ||||||||||||||  || ||||||||||||||||| ||| |||||    
T  44803382 attttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctgttgttaattctctaacgaaatgttgatg 44803469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 635
Target Start/End: Complemental strand, 23549043 - 23548985
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtca 635  Q
    |||||||||||||| ||||| ||||||||| || |||| ||||||||||||||||||||    
T  23549043 atatttcattaaatctttttgaaatcctcaaattttatttccgttatcaaaattagtca 23548985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 666
Target Start/End: Original strand, 49053550 - 49053623
Alignment:
Q  592 tttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||| |||| || |||||| |||||||||||||||||| || ||||||||||||||||  |||||||||    
T  49053550 tttttaaaattctcatattttatcttcgttatcaaaattagtca-tgttgttaattctctaacggaatgctgatg 49053623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 28854733 - 28854785
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 631  Q
    |||| |||||||||||||||||||||||||| |||| || |||||||||||||    
T  28854733 attttattaaatgtttttaaaatcctcacattttatttcagttatcaaaatta 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 634
Target Start/End: Original strand, 12908444 - 12908492
Alignment:
Q  586 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||||||||||||||||||||||| |||||||||||  |||| ||||||    
T  12908444 taaatgtttttaaaatcctcacattttatctccgtttccaaatttagtc 12908492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 49053965 - 49053838
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatctta-tctccgtt 621  Q
    |||||||||| |||||| ||||||| ||| ||||||| |||| | | ||||||      |||||||| ||||||||||||||||| | ||| | | | ||    
T  49053965 atatgtttttcgtccttacattttaagtctctttgaaaaataatccctacatt------tcattaaaagtttttaaaatcctcacgttttatttttcatt 49053872  T
Q  622 atcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||  |||| ||||| ||||||||    
T  49053871 atcaaaattagtctatgctattaatgctctaacg 49053838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Original strand, 1532483 - 1532512
Alignment:
Q  427 tggtacgaaaaaacttaaaaccaacttgtt 456  Q
    ||||||||||||||||||||||||||||||    
T  1532483 tggtacgaaaaaacttaaaaccaacttgtt 1532512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 622
Target Start/End: Complemental strand, 16755669 - 16755624
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| ||||||||||||||| || || |||||||||    
T  16755669 atatttcattaaatatttttaaaatcctcatattttttctccgtta 16755624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 523 - 656
Target Start/End: Original strand, 2191223 - 2191350
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  2191223 atatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 2191316  T
Q  623 tcaaaattagtcagtgctgttaattctctaacga 656  Q
    ||||||||||||  || |||||||||| ||||||    
T  2191317 tcaaaattagtccatgttgttaattctttaacga 2191350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 3691473 - 3691347
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||| ||||| || |||||||||||||||| | ||||||      ||||||||||||||||||||| |||||| ||||||||||||    
T  3691473 atatgtttttagtccttgtattttgcgcccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcttcacattttatctccgtta 3691380  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  ||||||||||| |||||||    
T  3691379 tcaaaattagtccatgctgttaattttctaacg 3691347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 21182313 - 21182450
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | ||||||      ||||||||||||||||||||  |||||| ||||||| ||||    
T  21182313 atatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatt------tcattaaatgtttttaaaattttcacattttatctctgtta 21182406  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  || ||||||||||||||||| |||||||||    
T  21182407 tcaaaattagtctctgttgttaattctctaacgaaatgctgatg 21182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 2517419 - 2517556
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| |||| |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  2517419 atatatttttagtccttacattttgcgtctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 2517512  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  || |||||| ||| |||||  |||||||||    
T  2517513 tcaaaattagtctttgttgttaactctttaacggaatgctgatg 2517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 24093162 - 24093299
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| || ||| || |||||||||||||||| | ||||||      ||||||||||||||||||||||||||||||| ||| |||||    
T  24093162 atatgtttttagtccttacactttgcgcccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacatcttctcttcgtta 24093255  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||| ||||  || ||||||||||||||||  |||||||||    
T  24093256 tcaaaatcagtccatgttgttaattctctaacggaatgctgatg 24093299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 523 - 665
Target Start/End: Original strand, 21216929 - 21217065
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  21216929 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 21217022  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    ||||||||||||  |||||||||||||||||||  ||||||||    
T  21217023 tcaaaattagtccttgctgttaattctctaacggaatgctgat 21217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 523 - 665
Target Start/End: Complemental strand, 21265473 - 21265337
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  21265473 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 21265380  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 665  Q
    ||||||||||||  |||||||||||||||||||  ||||||||    
T  21265379 tcaaaattagtccttgctgttaattctctaacggaatgctgat 21265337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 528 - 660
Target Start/End: Original strand, 3691094 - 3691220
Alignment:
Q  528 tttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaa 627  Q
    ||||||||||||  ||||| || || ||||||||||||||| ||||||      |||||||||||||||||||||||||||| ||||| |||||||||||    
T  3691094 tttttagtccttatattttgcgcccttttgaagaatagttcctacatt------tcattaaatgtttttaaaatcctcacattttatcaccgttatcaaa 3691187  T
Q  628 attagtcagtgctgttaattctctaacgagatg 660  Q
    |||||||  ||| ||||||||||||||| ||||    
T  3691188 attagtccctgcagttaattctctaacgggatg 3691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 21217405 - 21217268
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||| ||||||    
T  21217405 atatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatccccgtta 21217312  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  21217311 acaaaattagtccctgccgttaattctttaacggaatgctgatg 21217268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 21264997 - 21265134
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||| ||||||    
T  21264997 atatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatccccgtta 21265090  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  21265091 acaaaattagtccctgccgttaattctttaacggaatgctgatg 21265134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 577 - 654
Target Start/End: Complemental strand, 10706687 - 10706610
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||    
T  10706687 atatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccctgctgttaattctctaac 10706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 7083528 - 7083665
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| | ||||||      ||||||||| |||||||||||||||||| |||||||| |||    
T  7083528 atatgtttttaatccttacattttacgtccatttgaagaatagtccctacatt------tcattaaatttttttaaaatcctcacattttatctccctta 7083621  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    | |||| ||||   || ||||||||||||||||  |||||||||    
T  7083622 taaaaaatagtatctgttgttaattctctaacggaatgctgatg 7083665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 21267452 - 21267315
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||| | ||||||      |||||||||||||| ||||||||||||| |||| | | |||    
T  21267452 atatgtttttagtccttacatttttcgatcctttgaagaatagtccctacatt------tcattaaatgttttaaaaatcctcacattttatattcatta 21267359  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||| || |||||||||||||| |  |||||||||    
T  21267358 tcaaaattagtcactgatgttaattctctaatggaatgctgatg 21267315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 32114172 - 32114297
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| | ||||     || | |||||||||||||||||||||||||| ||||||| | ||    
T  32114172 atatgtttttagtccttacattttacg-ccctttgaagaatagtccctaca-----atct-attaaatgtttttaaaatcctcacattttatctctgata 32114264  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  | |||||||||||||||||    
T  32114265 tcaaaattagtcgctactgttaattctctaacg 32114297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 2606690 - 2606603
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||||  ||||||||||||| |||||| |||||||||    
T  2606690 atttcattaaatgtttttaaaattctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgctgatg 2606603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 39729642 - 39729564
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||  || ||||||||||||||||    
T  39729642 atatttcattaaatatttttaaaatcctcacattttatctccgttatcgaaattagtctatgttgttaattctctaacg 39729564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 24093592 - 24093514
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||| |||||||| |||||    
T  24093592 atattttattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtccatgctcttaattctttaacg 24093514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 32860868 - 32860946
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||  | || | ||||||||||||||    
T  32860868 atatttcattaaatgtttttaaaatcctaacattttatctccgtgatcaaaattagctattgttattaattctctaacg 32860946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 634
Target Start/End: Complemental strand, 32114505 - 32114450
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||||||||||| |||||||||| ||||||  ||||||| ||||||||||||||||    
T  32114505 atttcattaaatatttttaaaattctcacactttatctctgttatcaaaattagtc 32114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 6739634 - 6739675
Alignment:
Q  374 gatacagaaaaacataaaacaaacttattacagttaattaac 415  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  6739634 gatacagaaaaacttaaaaccaacttattacaattaattaac 6739675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 31588431 - 31588293
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccc-tttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtt 621  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| | ||||||      ||||||||| ||||||||||||| |||| |||||||||||    
T  31588431 atatgtttttagtccttacattttgcgtcccctttgaagaatagtccctacatt------tcattaaatatttttaaaatcctaacattttatctccgtt 31588338  T
Q  622 atcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||  |||||||||||||||||||  |||||||||    
T  31588337 atcaaaattagtccctgctgttaattctctaacggaatgctgatg 31588293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 87345 - 87220
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  |||||  |||||||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  87345 atatgtttttagtccttatattttgtgtccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 87252  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||  || |||||||||||||||    
T  87251 tcaaaattagtctttgttgttaattctctaac 87220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 16284280 - 16284417
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| |||   |||||||||||||       || |||||| ||||||||||||||||||||||| || ||||||||||||    
T  16284280 atatgtttttagtccttacattttgcgtttttttgaagaatagtc------tttatattttattaaatgtttttaaaatcctcatattttatctccgtta 16284373  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||| || ||||||||||||||||  |||||||||    
T  16284374 tcaaaattagtcattgttgttaattctctaacggaatgctgatg 16284417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 18339127 - 18339205
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||  |||||||||||||||||||    
T  18339127 atatttcattaaatgtttttaaaatcctcacattttatctccatcatcaaaattagtccatgctgttaattctctaacg 18339205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 18999724 - 18999598
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| | ||  ||||||||||||| ||||||||      ||||||||| |||||||||||||||||| ||||||  ||||    
T  18999724 atatgtttttagtccttacattttgcttcattttgaagaatagtccatacatt------tcattaaatatttttaaaatcctcacattttatctttgtta 18999631  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||| ||| || ||||||||||||||||    
T  18999630 tcaaaattaatcattgttgttaattctctaacg 18999598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 31176513 - 31176639
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||      ||||||||||||||||||||| ||| || ||||| ||||||    
T  31176513 atatgtttttagtccttatattttgcgtccctttgaagaacagtccatacatt------tcattaaatgtttttaaaatcgtcatattttatccccgtta 31176606  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  ||||||||| ||| |||||    
T  31176607 tcaaaattagtccttgctgttaactctttaacg 31176639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 3935778 - 3935641
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| |||||||||  ||||||||||||| | | ||||||      ||||||| |||||||||||||||||||| ||||||  ||||    
T  3935778 atatatttttagtcctttcattttacgctcctttgaagaataatccctacatt------tcattaattgtttttaaaatcctcacattttatctttgtta 3935685  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    | ||||||||||  |||||||||||||||||||| ||| |||||    
T  3935684 ttaaaattagtctctgctgttaattctctaacgaaatgttgatg 3935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 35373504 - 35373580
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||||| |||||||||||||||||||    
T  35373504 atttcattaaatatttttaaaatcctcatattttatccccgttattaaaattagtcactgctgttaattctctaacg 35373580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 35383296 - 35383372
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||  ||||||||||| |||||||    
T  35383296 atttcattaaatgtttttaaaatcctcatattttatccccgttatcaaaattagtccatgctgttaattttctaacg 35383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 649
Target Start/End: Complemental strand, 8750444 - 8750324
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| |||  |||||||||||||| | ||||||      | ||||||||| ||||||||||||| || ||||||||||||    
T  8750444 atatgtttttagtccttacattttgcgtttctttgaagaatagtccctacatt------ttattaaatgtgtttaaaatcctcatattttatctccgtta 8750351  T
Q  623 tcaaaattagtcagtgctgttaattct 649  Q
    ||||||||||||  || ||||||||||    
T  8750350 tcaaaattagtccatgttgttaattct 8750324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 13987336 - 13987415
Alignment:
Q  577 atatttcattaaatgttttt-aaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  13987336 atatttcattaaatgttttttaaaattctcacattttatctccgttattaaaattagtctctgctgttaattctctaacg 13987415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 8648149 - 8648023
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||| ||||||||||| |||||| ||||| || ||||||||||   ||||||      ||||||||| |||||||||||||||||| || |||||||||    
T  8648149 atatgattttagtccttacattttgcgtcctttggaagaatagtctttacatt------tcattaaatatttttaaaatcctcacattttttctccgtta 8648056  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  || |||||||||| |||||    
T  8648055 tcaaaattagtctatgttgttaattctttaacg 8648023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 635
Target Start/End: Original strand, 18999372 - 18999478
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| |   | ||||||||||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  18999372 atatgtttttagtccttacattttgcactcttttgaagaatagtccatacatt------tcattaaatatttttaaaatcctctcattttatctccgtta 18999465  T
Q  623 tcaaaattagtca 635  Q
    |||||||||||||    
T  18999466 tcaaaattagtca 18999478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 30415567 - 30415431
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||| ||||||||||| |||||||||  |||| |||||||||| | ||||||      ||||||| |||||||||||||||||||| || |||||||||    
T  30415567 atatggttttagtccttacattttacgctccttcgaagaatagtccctacatt------tcattaa-tgtttttaaaatcctcacattttgtctccgtta 30415475  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||| |   ||||||||||||| ||||  |||||||||    
T  30415474 tcaaaattaggctcagctgttaattctccaacggaatgctgatg 30415431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 577 - 654
Target Start/End: Original strand, 15978444 - 15978519
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||| ||||||||||| || |||||||||| ||||    
T  15978444 atatttcattaaatgtttttaaaa--ctcacattttatctcggttattaaaattagtcattgttgttaattctttaac 15978519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 654
Target Start/End: Original strand, 3935451 - 3935518
Alignment:
Q  584 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 654  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||    ||||||||||||||||    
T  3935451 attaaatgtttttaaaatcctcacattttatctccattatcaatattagtc---tctgttaattctctaac 3935518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 38834812 - 38834737
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||| | ||||| | ||||| |||||| |||||||||  |||||||||||||||||||    
T  38834812 atttcattaaatgtttttaaaattcacacatttgatctctgttatc-aaattagtctctgctgttaattctctaacg 38834737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 3406897 - 3406818
Alignment:
Q  576 aatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||||  || | |||||| |||||||    
T  3406897 aatattttattaaatatttttaaaattctcacattttatctctgttatcaaaattagtccctgatattaattttctaacg 3406818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 3406513 - 3406567
Alignment:
Q  577 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 631  Q
    |||||||||||||||||||||||||||| | || ||||||| |||||||||||||    
T  3406513 atatttcattaaatgtttttaaaatccttatattttatctctgttatcaaaatta 3406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 655
Target Start/End: Original strand, 29751724 - 29751789
Alignment:
Q  589 atgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||  |||  ||||||||||||||    
T  29751724 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacg 29751789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 655
Target Start/End: Original strand, 29752390 - 29752455
Alignment:
Q  589 atgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||  |||  ||||||||||||||    
T  29752390 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacg 29752455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 634
Target Start/End: Original strand, 8750066 - 8750121
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    |||||||||||| ||||||||||| | || | |||||| |||||||||||||||||    
T  8750066 atttcattaaatatttttaaaatcgtaacgttttatcttcgttatcaaaattagtc 8750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 566
Target Start/End: Original strand, 29750883 - 29750926
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagt 566  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||    
T  29750883 atatgttttcagtctttgcattttgcgtccctttgaagaatagt 29750926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 629
Target Start/End: Original strand, 1650060 - 1650110
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaat 629  Q
    |||| |||||||||||||||||| || | || |||||||||||||||||||    
T  1650060 attttattaaatgtttttaaaattcttatattttatctccgttatcaaaat 1650110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 108206 - 108069
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| || || ||||||||||  ||| ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  108206 atatgtttttagtccttacattttgcgcccttttgaagaattattcctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 108113  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||    
T  108112 tcaaaattagtctctgctgttaattctctaatggaatgctgatg 108069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 107728 - 107865
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||| |||| || ||| ||  ||||||||||||||| | ||||||      ||| ||||| |||||||||||||||||| ||||||||||||    
T  107728 atatgtttttagaccttacactttgcgctcctttgaagaatagtccctacatt------tcaataaatatttttaaaatcctcacattttatctccgtta 107821  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||| |||||  || ||||||||||||||||  |||||||||    
T  107822 tcaaaaatagtccatgttgttaattctctaacggaatgctgatg 107865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 22814302 - 22814428
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||| | ||| |||||| || |||||||||||||||| ||||||||      |||||||||||||||||||||||||||| |||||| |||||    
T  22814302 atatgtttttaattcttacattttgcgcccctttgaagaatagtccatacatt------tcattaaatgtttttaaaatcctcacattttatcttcgtta 22814395  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  |||| |||||| |||||||    
T  22814396 tcaaaattagtccctgctattaattttctaacg 22814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 634
Target Start/End: Original strand, 51471341 - 51471446
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||||||  ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  51471341 atatgttcttagttcttacattttgcgtccctttgaagaatagtttctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 51471434  T
Q  623 tcaaaattagtc 634  Q
    ||||||||||||    
T  51471435 tcaaaattagtc 51471446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 9217876 - 9217952
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||| |||||    
T  9217876 atttcattaaatgtttttaaaatcctcacattttatctccgttattaaaattagtcactgttgttaattctttaacg 9217952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 25770327 - 25770464
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| ||||||   ||||||||||||||||| | ||||||      |||||||||||||||| ||||||||||| |||||  |||||    
T  25770327 atatgtttttagtccttacattttgtatccctttgaagaatagtccctacatt------tcattaaatgtttttagaatcctcacattttatcatcgtta 25770420  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||| ||  || ||||||||||||||||  |||||||||    
T  25770421 tcaaaattaatccatgttgttaattctctaacggaatgctgatg 25770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 590 - 666
Target Start/End: Complemental strand, 26741327 - 26741251
Alignment:
Q  590 tgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  26741327 tgtttttaaaatcctcacattttatctctgttatcaaaattagtcattgctgttaattctctaacggaatgctgatg 26741251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 44504148 - 44504224
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||    
T  44504148 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaattagtccatgttgttaattctctaacg 44504224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 523 - 653
Target Start/End: Original strand, 50732231 - 50732355
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||  ||||| |||||| ||  |||||||| |||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  50732231 atatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatt------tcattaaatatttttaaaatcctcgcattttatctccgtta 50732324  T
Q  623 tcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||  |||||||||||||||||    
T  50732325 tcaaaattagtccctgctgttaattctctaa 50732355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 523 - 653
Target Start/End: Complemental strand, 50780624 - 50780500
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||  ||||| |||||| ||  |||||||| |||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  50780624 atatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatt------tcattaaatatttttaaaatcctcgcattttatctccgtta 50780531  T
Q  623 tcaaaattagtcagtgctgttaattctctaa 653  Q
    ||||||||||||  |||||||||||||||||    
T  50780530 tcaaaattagtccctgctgttaattctctaa 50780500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 526 - 631
Target Start/End: Complemental strand, 44504467 - 44504368
Alignment:
Q  526 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 625  Q
    |||||||||||||| |||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||||||||| |||||||||||||||    
T  44504467 tgtttttagtccttacattttgcacccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatctccgttatca 44504374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 655
Target Start/End: Complemental strand, 37172560 - 37172434
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||| ||||||| |||||||||||||||||||||| ||| |||| |      | |||||||||||||||||||  ||||| |||||||  |||    
T  37172560 atatatttttaatccttgcgttttacgtccctttgaagaataattcctacact------ttattaaatgtttttaaaatctccacattttatctctatta 37172467  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  |||||||||||||||||||    
T  37172466 tcaaaattagtccatgctgttaattctctaacg 37172434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 9218597 - 9218461
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||| || |||||| ||  ||||||||||||||| | ||      ||||||||||||||||||||||||| |||||| |||||| |||||    
T  9218597 atatgtttttagtcattacattttgcgctcctttgaagaatagtcccta------tatttcattaaatgtttttaaaatcatcacattttatcttcgtta 9218504  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    || |||||||||  || ||||||||||||||||  |||||||||    
T  9218503 tc-aaattagtctctgttgttaattctctaacggaatgctgatg 9218461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 13637864 - 13637739
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||| |||||||| |||||| || ||||||||||||||||   ||||||      ||||||||| |||||||||||||||||| ||||||||||||    
T  13637864 atatgtttctagtccttacattttgcgcccctttgaagaatagtctctacatt------tcattaaatatttttaaaatcctcacattttatctccgtta 13637771  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    |||||| |||||  || |||||||||| ||||    
T  13637770 tcaaaactagtccttgttgttaattctttaac 13637739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 27013465 - 27013541
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||  || ||||||||||||||||    
T  27013465 attttattaaatgtttttaaaatccttacattttatctccgttatcacaattagtctatgttgttaattctctaacg 27013541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 43933446 - 43933583
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||| |||||||||||| ||||||  | || ||||||||||||| | ||||||      ||||||||| |||||||||||||||||| |||||| |||||    
T  43933446 atatatttttagtccttacattttgtgcccgtttgaagaatagtccctacatt------tcattaaatatttttaaaatcctcacattttatcttcgtta 43933539  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  || |||||||||| ||| |  |||||||||    
T  43933540 tcaaaattagtccctgttgttaattctataatggaatgctgatg 43933583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 579 - 634
Target Start/End: Original strand, 37172137 - 37172192
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 634  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37172137 atttcattaaatgtttttaaaatcctcacagtttatctccgttatcaaaattagtc 37172192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 38485703 - 38485828
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||| ||||||||||| ||||||  | | |||||||||||||| ||||||||      | |||| ||||||||||||||||  ||| || |||||||||    
T  38485703 atatgattttagtccttacattttgtgcctctttgaagaatagtccatacatt------ttattatatgtttttaaaatccttgcatttt-tctccgtta 38485795  T
Q  623 tcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||  ||||||||||||| |||||    
T  38485796 tcaaaattagtctttgctgttaattctttaacg 38485828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 633
Target Start/End: Complemental strand, 43933761 - 43933708
Alignment:
Q  580 tttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagt 633  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  43933761 tttcattaaatgtttttaaaatcctcatattttatctctgttatcaaaattagt 43933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 51755948 - 51755903
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatc 624  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  51755948 atttcattaaatgtttttaaaatcctcacattttatctccgttatc 51755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 655
Target Start/End: Original strand, 13637531 - 13637607
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    |||||||||||| ||||||||||| ||| || |||||| |||||||||||||||||  | | |||||||||||||||    
T  13637531 atttcattaaatatttttaaaatcttcatattttatcttcgttatcaaaattagtctttaccgttaattctctaacg 13637607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 655
Target Start/End: Complemental strand, 34743504 - 34743428
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 655  Q
    ||||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  ||| ||||||||| |||||    
T  34743504 atttcattaaatgttttaaaaatcctcacattttatatatgttatcaaaattagtctctgcggttaattctttaacg 34743428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 45728401 - 45728349
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacatt 575  Q
    ||||||||||||||||| ||||||  |||||||||||||||||| ||||||||    
T  45728401 atatgtttttagtccttacattttgtgtccctttgaagaatagtccatacatt 45728349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 609
Target Start/End: Complemental strand, 132143 - 132063
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacat 609  Q
    |||||| |||||||||| |||||| |   ||||||||||||||| | ||||||      ||||||||||||||||||||||||||||    
T  132143 atatgtatttagtccttacattttgcactcctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacat 132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 456
Target Start/End: Complemental strand, 51265697 - 51265668
Alignment:
Q  427 tggtacgaaaaaacttaaaaccaacttgtt 456  Q
    ||||||||||||||||||||||||||||||    
T  51265697 tggtacgaaaaaacttaaaaccaacttgtt 51265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 666
Target Start/End: Original strand, 34798 - 34935
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    |||||||||||||||||  ||||| ||||  |||||| ||| || ||||||||      |||||||||||||||||| | ||||||| ||||||||||||    
T  34798 atatgtttttagtccttatattttgcgtctatttgaataatggtccatacatt------tcattaaatgtttttaaagtactcacattttatctccgtta 34891  T
Q  623 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    ||||||||||||  |||| |||||| ||||||| ||||||||||    
T  34892 tcaaaattagtctctgctattaattttctaacgggatgctgatg 34935  T

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Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 654
Target Start/End: Complemental strand, 35276 - 35151
Alignment:
Q  523 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 622  Q
    ||||||||||||||||| |||||| |||||||||||||||||||   ||||||      | ||| |||||||||||||||||||||| ||||||| ||||    
T  35276 atatgtttttagtccttacattttgcgtccctttgaagaatagtctctacatt------ttattgaatgtttttaaaatcctcacattttatctcggtta 35183  T
Q  623 tcaaaattagtcagtgctgttaattctctaac 654  Q
    | |||||||||   |||| |||| ||||||||    
T  35182 tgaaaattagtttatgctcttaactctctaac 35151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 666
Target Start/End: Original strand, 547 - 634
Alignment:
Q  579 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 666  Q
    |||||||||||||||||||||||  |||||| |||| |  ||||||||||||||||  || ||||| || |||||||  |||||||||    
T  547 atttcattaaatgtttttaaaattttcacattttatttttgttatcaaaattagtctatgttgttatttttctaacggaatgctgatg 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 7342 - 7424
Alignment:
Q  235 ctttacttaattgtaacaagttagtttttaagtaaatttttgcaccatttaggtcttttaa-atatttaattgtaacttttaaac 318  Q
    ||||||||||||||||||||||| |||||||  |  |||||| || |||||  ||||||||  ||||||||| ||||||||||||    
T  7342 ctttacttaattgtaacaagttattttttaa--atttttttgtactatttaaatcttttaagttatttaattataacttttaaac 7424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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