View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20623_high_5 (Length: 278)
Name: NF20623_high_5
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 42223142 - 42223388
Alignment:
| Q |
14 |
attattctctgtgtaaggggctttttggaatgtaaattttttcccacccacctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcct |
113 |
Q |
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| T |
42223142 |
attattctctgtgtaaggggctttttggaatgtaaattttttcccacccatctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcct |
42223241 |
T |
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| Q |
114 |
gaagactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgcgatctgatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42223242 |
gaagactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgtgatctgatt |
42223341 |
T |
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| Q |
214 |
acatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtg |
260 |
Q |
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| T |
42223342 |
acatttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtg |
42223388 |
T |
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