View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20623_low_2 (Length: 662)
Name: NF20623_low_2
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 652
Target Start/End: Complemental strand, 32262251 - 32261611
Alignment:
| Q |
1 |
ctacctttcaagaacagaaatataacatataacattgtggataatatagatattgtacttatatgcataaaaagtaatgaatctgttgcaaaaatcttga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32262251 |
ctacctttcaagaacagaaatataacatataacattgtggataatatagatattgtacttatatgcataaaaagtaatgaa-----------aatcttga |
32262163 |
T |
|
| Q |
101 |
cgattaccatctcaatttggaggtctttttcccgcagcaattctgcagaatcaggtttacgctgggttgaccctgactttttcaactcgctttcgagcct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262162 |
cgattaccatctcaatttggaggtctttttcccgcagcaattctgcagaatcaggtttacgctgggttgaccctgactttttcaactcgctttcgagcct |
32262063 |
T |
|
| Q |
201 |
agccaactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32262062 |
agccaactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataag |
32261963 |
T |
|
| Q |
301 |
agggtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctactattgaagactgcagtatgcggg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32261962 |
agggtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcggg |
32261863 |
T |
|
| Q |
401 |
ttagctttgaatctctgaaagggatgtgtccatttcgccccttgctgtgatcaaattcatattttctacttttttagataaaatcaaaggatacatttca |
500 |
Q |
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| T |
32261862 |
ttagctttgaatctctgaaagggatgtgtccatttcgccccttgctgtgatcaaattcatgttttctacttttttagataaaatcaaaggatacatttca |
32261763 |
T |
|
| Q |
501 |
cgaaaagtatataacatctgtgtgagtaaacacatttgaagtgcaaccatttcaagctaacctgagtttgcggatgacagttcctagagtcagtaaacta |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261762 |
cgaaaagtatataacatctgtgtgagtaaacacatttgaagtgcaaccatttcaagctaacctgagtttgcggatgacagttcctagagtcagtaaacta |
32261663 |
T |
|
| Q |
601 |
cggttgatgtggcatccttctttcaaccttgtaccagctgaattagtctgtg |
652 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32261662 |
cggttgatgtggcatccttctttcaaccttgtaccagctgaattagtttgtg |
32261611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 6315825 - 6315707
Alignment:
| Q |
266 |
tagttgacacttctttagcgcaacttgcaaataagagggtgtttctagtttgttcaacatagctccgtgc----aggactcatggtacagatgattgctg |
361 |
Q |
| |
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|||||| |||||||||||| || ||| ||||| |||||||||| | |||||||||||||| |||| ||| ||| ||||||||| ||||||| || |
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| T |
6315825 |
tagttgccacttctttagcacacctttcaaatgggagggtgtttttggtttgttcaacataactccatgcatgtagggctcatggtatgaatgattgatg |
6315726 |
T |
|
| Q |
362 |
ttctagcattgcctactat |
380 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
6315725 |
ttctagcattgcctcctat |
6315707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 172 - 460
Target Start/End: Complemental strand, 8395616 - 8395328
Alignment:
| Q |
172 |
cctgactttttcaactcgctttcgagcctagccaactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttg |
271 |
Q |
| |
|
||||| ||| |||| || |||||||| |||||| ||| |||| ||||| ||||| | | ||||||||| |||||||||||||||| |||||||||| |
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| T |
8395616 |
cctgaatttctcaattcactttcgagtttagccacctccttttgtaattgcttgactagtgctttatcagataccactacattgacttgtgcattagttt |
8395517 |
T |
|
| Q |
272 |
acacttctttagcgcaacttgcaaataagagggtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcatt |
371 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||| |||||||| ||||||||||| ||||||||||| |
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|
| T |
8395516 |
caacttctttagcacaacttgcaaagaagagagtgtttcgggtttgttcaacatggctccgcgcagggctcatggtgcagatgattgcagttctagcatt |
8395417 |
T |
|
| Q |
372 |
gcctactattgaagactgcagtatgcgggttagctttgaatctctgaaagggatgtgtccatttcgccccttgctgtgatcaaattcat |
460 |
Q |
| |
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|||| ||| ||| || |||| |||||| ||||||||||||||||||||||| || |||||||||| ||||||||| | ||||||||| |
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| T |
8395416 |
gcctcctaatgatgattgcaatatgcgcgttagctttgaatctctgaaaggaatatgtccatttcttcccttgctgcaaccaaattcat |
8395328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 630
Target Start/End: Complemental strand, 8395202 - 8395128
Alignment:
| Q |
556 |
gctaacctgagtttgcggatgacagttcctagagtcagtaaactacggttgatgtggcatccttctttcaacctt |
630 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||||||||| || || ||||| ||||||||||||||| |
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|
| T |
8395202 |
gctaacctgagtttgcggataacagttcctagagttaataaactacgatttatatggcaaccttctttcaacctt |
8395128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 179 - 431
Target Start/End: Complemental strand, 27279574 - 27279322
Alignment:
| Q |
179 |
ttttcaactcgctttcgagcctagccaactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttc |
278 |
Q |
| |
|
|||| ||||||| ||| | ||| ||||||||| |||||||||| |||||||| | |||||||||| ||||||||| || | ||| ||||| | ||||| |
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|
| T |
27279574 |
tttttaactcgccttccaacctggccaactctttttgcaattgcttgaccaaggccttatcagacatcactacattaacctgtgctttagtggtaacttc |
27279475 |
T |
|
| Q |
279 |
tttagcgcaacttgcaaataagagggtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctact |
378 |
Q |
| |
|
||| || |||| ||||| | || |||||||||||||||||||||| ||||||||||| |||| || || ||||| ||||||||||||||||| || |
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|
| T |
27279474 |
ttttgcacaacaagcaaaaagaagcgtgtttctagtttgttcaacatgactccgtgcagggctcaaagtgcaaatgatagctgttctagcattgccacct |
27279375 |
T |
|
| Q |
379 |
attgaagactgcagtatgcgggttagctttgaatctctgaaagggatgtgtcc |
431 |
Q |
| |
|
| ||| |||||||||||| || | ||| ||||||||| || ||||||||| |
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|
| T |
27279374 |
aagcaaggctgcagtatgcgtgtcaacttagaatctctgtaattgatgtgtcc |
27279322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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