View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20623_low_4 (Length: 358)
Name: NF20623_low_4
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 35290201 - 35289863
Alignment:
| Q |
11 |
ttattctgcagaaacattatatgctaacatgatacttttatgcagttgaatatgaataccttctttcttcgagcttctaatatttcttccataggtggtc |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35290201 |
ttattctgcagaaacattatatactaacatgatacttt-atgcagttgaatatgaataccttctttcttcgagcttctaatatttcttccataggtggtc |
35290103 |
T |
|
| Q |
111 |
gtcctggaaaccaaaaacaaacaattaaatcattaattaaaaagatattaacataatcattctagttagcataaccataggggcaagtcttgctcacaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35290102 |
gtcctggaaaccaaaaacaaacaattaaatcataaattaaaaagatattaacataatcattctagttagcataaccatagaggcaagtcttgctcacaag |
35290003 |
T |
|
| Q |
211 |
tca-----caagtagtaaaattactgccacgtcaataattaattatacttagcaataagaaatgaaactaaagtgatgatcttattgatgatggatttgt |
305 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35290002 |
tcacaatgcaagtagtaaaattactgccacgtcaataattaattatacttagcaataagaaatgaaactaaagtgatgatcttattgatgatggatttgt |
35289903 |
T |
|
| Q |
306 |
catcaattttaaaatcggatgatactcttatctcaatagt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35289902 |
catcaattttaaaatcggatgatactcttatctcaatagt |
35289863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University