View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20623_low_6 (Length: 276)
Name: NF20623_low_6
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 33887572 - 33887847
Alignment:
| Q |
1 |
tggagaccattccagaggaaagagagctatatgttgataataaggacaaagatactaatccagaagaacttgaaaaagcttacatccatttggaaattga |
100 |
Q |
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| T |
33887572 |
tggagaccattccagaggaaagagagctatatgttgataataaggacaaagatactaatccagaagaacttgaaaaagcttacatccatttggaaattga |
33887671 |
T |
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| Q |
101 |
tttgcaagtactgaggaagtccttcgatatgggactttgtgtactatgctttagcttagggtacatggtttcttctaaatttcacccacggaccaagttt |
200 |
Q |
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| T |
33887672 |
tttgcaagtgctgaggaagtccttcgatatgggactttgtgtactatgctttagcttagggtacatggtttctactaaatttcacccacggaccaagttt |
33887771 |
T |
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| Q |
201 |
tcttcacttttatcatcatcttctttcttgttcttgtaatatatgtaggtttctttaggggattgtaacatatgta |
276 |
Q |
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| T |
33887772 |
tcttcacttttatcatcatcttctttcttgttcttgtaatatatgtaggtttctttaggcgattgtaacatatgta |
33887847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33892588 - 33892793
Alignment:
| Q |
1 |
tggagaccattccagaggaaagagagctatatgttgataataaggacaaagatactaatccagaagaacttgaaaaagcttacatccatttggaaattga |
100 |
Q |
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| T |
33892588 |
tggagaccattccagaggaaagagagatatgtgttgataataatgacaatgatattcatccagaagaacttgaaaaaacttacactcatttggaaattga |
33892687 |
T |
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| Q |
101 |
tttgcaagtactgaggaagtccttcgatatgggactttgtgtactatgctttagcttagggtacatggtttcttctaaatttcacccacggaccaagttt |
200 |
Q |
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| T |
33892688 |
tttacaagtattgaggaagtacttcgatatgggactttgtgtactctgctttagcttgggttacatggtttctactaaatttcatccacggcccaagttt |
33892787 |
T |
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| Q |
201 |
tcttca |
206 |
Q |
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| T |
33892788 |
tcttca |
33892793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 33887885 - 33887923
Alignment:
| Q |
238 |
aatatatgtaggtttctttaggggattgtaacatatgta |
276 |
Q |
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| T |
33887885 |
aatatatgtaggtttctttaggggattgtaacatatgta |
33887923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 36601302 - 36601458
Alignment:
| Q |
90 |
ttggaaattgatttgcaagtactgaggaagtccttcgatatgggactttgtgtactatgctttagcttagggtacatggtttcttctaaatttcacccac |
189 |
Q |
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|||||||| |||||||||||||| |||||||| | |||||||||||||||||||| ||| || | | || |||||||||||| ||||||||| |||| |
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| T |
36601302 |
ttggaaatggatttgcaagtactaaggaagtctcttgatatgggactttgtgtactttgccttggtgttggttacatggtttctactaaatttcgtccac |
36601401 |
T |
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| Q |
190 |
ggaccaagttttcttcacttttatcatcatcttctttcttgttcttgtaatatatgt |
246 |
Q |
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| T |
36601402 |
gacctaagttttcttcgcttttatcatcatcctcttttttgttcttctaacatatgt |
36601458 |
T |
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