View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20623_low_8 (Length: 227)
Name: NF20623_low_8
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 26461715 - 26461908
Alignment:
| Q |
18 |
gcaccatcgtcaatccaacactctccgttacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
117 |
Q |
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| T |
26461715 |
gcaccatcgtcaatccaacactctccattacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
26461814 |
T |
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| Q |
118 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatccaatatcactgatctccaactcaccgtccta |
211 |
Q |
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| T |
26461815 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatcaaatatcactgatctccaactcaccgtccta |
26461908 |
T |
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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 38006098 - 38005906
Alignment:
| Q |
18 |
gcaccatcgtcaatccaacactctccgttacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
117 |
Q |
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||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38006098 |
gcaccatcgtcaacccaacactctccattacatcatcaaccacccctctctctatcctcaacgaactcaaaatctacaaccaaatcgccaccctcctccg |
38005999 |
T |
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| Q |
118 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatccaatatcactgatctccaactcaccgtcct |
210 |
Q |
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|||||||| |||||| || || |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
38005998 |
ccaacccagctccggtgctggcgacaacaatctttgtcgttggctctatgacactttccaatccaatgtcggtgatctccagctcaccgtcct |
38005906 |
T |
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