View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20623_low_9 (Length: 205)
Name: NF20623_low_9
Description: NF20623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20623_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 26461715 - 26461884
Alignment:
| Q |
18 |
gcaccatcgtcaatccaacactctccgttacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26461715 |
gcaccatcgtcaatccaacactctccattacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
26461814 |
T |
|
| Q |
118 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatccaatatc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26461815 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatcaaatatc |
26461884 |
T |
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Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 38006098 - 38005932
Alignment:
| Q |
18 |
gcaccatcgtcaatccaacactctccgttacctcatcaaccacccctctctctatcctcaacgaacccgaaatctacaaccaaatcgccaccctcctccg |
117 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38006098 |
gcaccatcgtcaacccaacactctccattacatcatcaaccacccctctctctatcctcaacgaactcaaaatctacaaccaaatcgccaccctcctccg |
38005999 |
T |
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| Q |
118 |
ccaacccaactccggcgccggtgacaacaatctttgtcgttggctctacgacactttccaatccaat |
184 |
Q |
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|||||||| |||||| || || |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38005998 |
ccaacccagctccggtgctggcgacaacaatctttgtcgttggctctatgacactttccaatccaat |
38005932 |
T |
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