View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_high_4 (Length: 449)
Name: NF20624_high_4
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Complemental strand, 3087225 - 3086806
Alignment:
| Q |
21 |
acacgttaaggggcattgatgaatgttgagtacaagattgaaataccaatgtgtttaagttaacttcaaagtttagttgaccttaactaacattaagatg |
120 |
Q |
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| T |
3087225 |
acacgttaaggggcattgttgaatgttgagtacaagattgaaataccaatgtgtttaagttaacttcaaagtttagttgaccttaactaacattaagatg |
3087126 |
T |
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| Q |
121 |
gcatattctggtatatacaaggtagcaatcagcaaagacatgataatgatataatgaagtcatgtgaaacactgttgtcaattagttgttgagtaaaagg |
220 |
Q |
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| T |
3087125 |
gcatattctggtatatacaaggtagcaatcagcaaagacatgataatgatataatgaagtcatgtgaaacactgttgtcaattagttgttgagtaaaagg |
3087026 |
T |
|
| Q |
221 |
aaacaaaatttgagttctttgcttatggtacactgttacctatacatgcaaatgcaacttggaagcaacatatttgtggtctcaaggtcacgatttccac |
320 |
Q |
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| T |
3087025 |
aaacaaaatttgagttctttgcttatggtacactgttacctatacatgcaaatgcaacttgcaagcaacatgtttgtggtctccaggtcacgatttccac |
3086926 |
T |
|
| Q |
321 |
gactaggtgatgcaattgtagttga-aaaatggctggtattaggagcattagtttttgcttcttagaccacacttgcttaaattgggcaacacataaaag |
419 |
Q |
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| T |
3086925 |
gactaggtgatgcaattgtagttgaaaaaatggctggtattaggagcattagtttttgcttcttagaccacacttgcttaaattgggcaacacataaaag |
3086826 |
T |
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| Q |
420 |
aaatgagcacaggttctgct |
439 |
Q |
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||||||||||||||| |||| |
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| T |
3086825 |
aaatgagcacaggttatgct |
3086806 |
T |
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