View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20624_high_5 (Length: 435)

Name: NF20624_high_5
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20624_high_5
NF20624_high_5
[»] chr7 (32 HSPs)
chr7 (3-416)||(29578034-29578447)
chr7 (14-395)||(29582224-29582605)
chr7 (157-397)||(8609464-8609704)
chr7 (147-415)||(6789049-6789317)
chr7 (226-397)||(27831256-27831427)
chr7 (226-397)||(17259857-17260028)
chr7 (195-397)||(8575911-8576113)
chr7 (195-397)||(8581285-8581487)
chr7 (196-397)||(7878114-7878315)
chr7 (226-397)||(8590254-8590425)
chr7 (226-397)||(17267555-17267726)
chr7 (232-315)||(27846569-27846652)
chr7 (264-397)||(8102321-8102454)
chr7 (232-397)||(8545255-8545420)
chr7 (195-397)||(8569896-8570098)
chr7 (193-403)||(10494749-10494959)
chr7 (25-74)||(8537454-8537503)
chr7 (264-377)||(8667073-8667186)
chr7 (226-314)||(3146880-3146968)
chr7 (274-397)||(8017794-8017917)
chr7 (21-74)||(8383577-8383630)
chr7 (257-314)||(8537683-8537740)
chr7 (264-308)||(13333838-13333882)
chr7 (277-316)||(8383338-8383377)
chr7 (27-74)||(8601394-8601441)
chr7 (276-305)||(1301127-1301156)
chr7 (21-74)||(8569725-8569778)
chr7 (3-68)||(8581096-8581161)
chr7 (258-403)||(8616329-8616474)
chr7 (138-179)||(17259764-17259805)
chr7 (138-179)||(17267467-17267508)
chr7 (264-320)||(39985300-39985356)
[»] chr4 (3 HSPs)
chr4 (147-397)||(35131993-35132243)
chr4 (193-403)||(30774835-30775045)
chr4 (239-355)||(9336314-9336430)
[»] chr1 (4 HSPs)
chr1 (226-403)||(15594650-15594827)
chr1 (202-396)||(34467170-34467364)
chr1 (276-397)||(4678938-4679059)
chr1 (226-299)||(52549425-52549498)
[»] chr2 (9 HSPs)
chr2 (193-397)||(16657898-16658102)
chr2 (155-314)||(43624957-43625116)
chr2 (147-353)||(12245831-12246037)
chr2 (193-407)||(16662363-16662577)
chr2 (226-353)||(11999024-11999151)
chr2 (226-344)||(14703024-14703142)
chr2 (257-344)||(7541873-7541960)
chr2 (269-403)||(12234349-12234482)
chr2 (227-397)||(12258962-12259132)
[»] chr8 (2 HSPs)
chr8 (235-403)||(12528129-12528297)
chr8 (232-327)||(43744438-43744533)
[»] chr5 (1 HSPs)
chr5 (193-315)||(28219501-28219623)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 416
Target Start/End: Complemental strand, 29578447 - 29578034
Alignment:
Q  3 aggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatct 102  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578447 aggaggaacaaagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatct 29578348  T
Q  103 acacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578347 acacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcg 29578248  T
Q  203 acaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtc 302  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578247 acaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtc 29578148  T
Q  303 ggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttca 402  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29578147 agggtttatgctcatgcacaaatccctacccttgaaaaagtcttgcaatagtttccgcactttgggaattctagatgaacctccaacaaggacaatttca 29578048  T
Q  403 tgtaccatactctg 416  Q
    ||||||||||||||    
T  29578047 tgtaccatactctg 29578034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 29582605 - 29582224
Alignment:
Q  14 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| |||||||||||||||||||||    
T  29582605 agagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaattgagacaccaaattggttatctacacttgtctt 29582506  T
Q  114 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 213  Q
    |||||| || || ||||||||   |||||| ||||||||| |||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  29582505 acatctttcttctgtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgta 29582406  T
Q  214 atatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgc 313  Q
    ||||||  |||||  |||| |||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  29582405 atatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgc 29582306  T
Q  314 tcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggac 395  Q
    |||||||||||||| | ||||||||||| ||||||||||| |   ||| ||||||||||||||| || || |||| ||||||    
T  29582305 tcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaattctagaagagccaccaataaggac 29582224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 157 - 397
Target Start/End: Original strand, 8609464 - 8609704
Alignment:
Q  157 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaa 256  Q
    ||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||||| ||||| ||  ||||| ||||||||    |||||||| |||     
T  8609464 ggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcac 8609563  T
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagttt 356  Q
     ||||||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| ||||||||| | || |||||||||||||||| ||| |     
T  8609564 ccaacaaagcagcctggacagcagcaccataagcaaccgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgcagtagctg 8609663  T
Q  357 ccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    |  || ||| ||||| ||||| |||||||||||||| ||||    
T  8609664 cttcactttcggaatcctagaagaacctccaacaagaacaa 8609704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 415
Target Start/End: Original strand, 6789049 - 6789317
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttg-tccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattctt 245  Q
    ||||||| |||||||||| ||||||||||||| |||| ||  | | | ||||||| ||||| ||||||| ||||  ||  ||||| ||||||||| ||||    
T  6789049 agtgttcctaggaatcaccacactcatgacatttcctattactgcct-taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactctt 6789147  T
Q  246 gatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtct 345  Q
       ||| ||  |||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||||||| | ||| ||||||  |||    
T  6789148 agagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttct 6789247  T
Q  346 tgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcatgtaccatactct 415  Q
    ||||||||||   ||| ||||||||||||||| || || |||||||||||||  |||| ||| |||||||    
T  6789248 tgcaatagttgttgcactttgggaattctagaagacccaccaacaaggacaacatcatttacaatactct 6789317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 397
Target Start/End: Complemental strand, 27831427 - 27831256
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    ||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || || || |||||| |||||||||    
T  27831427 accaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaat 27831328  T
Q  326 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    || | ||||||||||||||   |||||| | | ||| ||||||||| || || || || |||||||||||||    
T  27831327 cctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaa 27831256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 17259857 - 17260028
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| |||| || |    
T  17259857 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataatt 17259956  T
Q  326 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    || |||||||||| || || |||||||||| | ||| ||| ||||| ||||| || || |||||||||||||    
T  17259957 ccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaa 17260028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 397
Target Start/End: Original strand, 8575911 - 8576113
Alignment:
Q  195 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 294  Q
    ||||| |||||| ||||||| |||||  || ||||| ||||||||||||||  |||| ||| ||||||||||||| || ||| | |||||||||||||||    
T  8575911 accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaaca 8576010  T
Q  295 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 394  Q
    ||||| || ||||| |||||| | || || ||| | ||||||||||  || || ||||| |  | || ||| ||||| ||||| ||||| ||||||||||    
T  8576011 gcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaagga 8576110  T
Q  395 caa 397  Q
    |||    
T  8576111 caa 8576113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 397
Target Start/End: Original strand, 8581285 - 8581487
Alignment:
Q  195 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 294  Q
    |||||| ||||| ||||||| ||||| ||| | ||| ||||||||| |||| ||||| ||| | | |||||||||||| | ||| |||||||||||||||    
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  295 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 394  Q
    ||||| || ||||| |||||| |||| || ||| | |||| |||||| || || ||||| |  | || ||| ||||| ||||| ||||| ||||||||||    
T  8581385 gcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaagga 8581484  T
Q  395 caa 397  Q
    |||    
T  8581485 caa 8581487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 196 - 397
Target Start/End: Complemental strand, 7878315 - 7878114
Alignment:
Q  196 ccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 295  Q
    ||||| ||||| || |||| ||||  ||| |||||||| ||||||||||| || ||||||   | || ||||||||| ||||||||||||||||||||||    
T  7878315 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 7878216  T
Q  296 cctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggac 395  Q
    | || || ||||| |||||  |||| | |||| | ||||| |||||||| |||||||| | | ||| |||| |||| |||||||| || |||||||| ||    
T  7878215 cttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaatcctagatgatccaccaacaagtac 7878116  T
Q  396 aa 397  Q
    ||    
T  7878115 aa 7878114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 8590254 - 8590425
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    |||||||| ||||||||||| || ||||||   | ||||||||| || |||||||||||||||||||||||||| || || || |||||  || | | ||    
T  8590254 accaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagat 8590353  T
Q  326 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    || | ||| | ||||||||||||||||| | | ||| ||||||||| ||||| ||||| |||||||| ||||    
T  8590354 ccttccccataaaaaagtcttgcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaa 8590425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 17267555 - 17267726
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| |||||||||||||||||||| || ||||| || ||  |||| || |    
T  17267555 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataatt 17267654  T
Q  326 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    || | |||||||| ||||  |||||||||| | ||| ||| ||||| ||||| || || |||||||||||||    
T  17267655 ccttccccttgaagaagttctgcaatagttgctgcactttcggaatcctagaagacccaccaacaaggacaa 17267726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 27846652 - 27846569
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctc 315  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| || ||||| ||||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctc 27846569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 8102321 - 8102454
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcatt 363  Q
    |||||| || ||||| ||||||||||||||||||||||||||||| |||||  |||| |  ||| |||| ||||| ||||||||||| |||| | | | |    
T  8102321 agcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctgaact 8102420  T
Q  364 ttgggaattctagatgaacctccaacaaggacaa 397  Q
    |||||||| |||| |||||| |||||||| ||||    
T  8102421 ttgggaatcctagttgaaccaccaacaagaacaa 8102454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 397
Target Start/End: Original strand, 8545255 - 8545420
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatac 331  Q
    ||||| ||||||||  || | ||| ||| |||||||||||| |||||||||||||||||||||||||| || ||||| |||||| |||| || ||| | |    
T  8545255 tttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcctcatcagggttaatgctcttgcataattccttcc 8545354  T
Q  332 ccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    |||| ||||| || || ||||| |  | || ||| ||||| ||||| ||||| |||||||||||||    
T  8545355 ccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgccaacaaggacaa 8545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 397
Target Start/End: Original strand, 8569896 - 8570098
Alignment:
Q  195 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 294  Q
    |||||| ||||| ||||||| ||||| ||| ||||| ||||||||| |||| | ||  ||| |   |||| ||||||| | ||||||||| |||||||||    
T  8569896 accaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaaca 8569995  T
Q  295 gcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaagga 394  Q
    ||||| || ||||| |||||  |||| || ||| | |||| |||||| ||||| ||||| | || || ||| ||||| ||||| ||||| ||||||||||    
T  8569996 gcctcatcagggttaatgctgttgcataattccttcccctggaaaaactcttgtaatagctgcctcactttaggaatcctagaagaaccaccaacaagga 8570095  T
Q  395 caa 397  Q
    |||    
T  8570096 caa 8570098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 403
Target Start/End: Complemental strand, 10494959 - 10494749
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| || |||| |||||  |  ||||| || || |||||||| | ||| ||| |||| | ||||||||| |||||||||||||||||||    
T  10494959 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaa 10494860  T
Q  293 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 392  Q
    ||||||| || ||||| || | |||| | || ||| | ||||||||||| ||| ||||||| | | ||| ||||||||| ||||| || || || |||||    
T  10494859 cagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaag 10494760  T
Q  393 gacaatttcat 403  Q
     ||||| ||||    
T  10494759 aacaatatcat 10494749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 8537454 - 8537503
Alignment:
Q  25 aaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8537454 aaacccaacaagttgttctcactggctttcattctctcaccctcataaac 8537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 8667073 - 8667186
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcatt 363  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| || | |||| | || ||| | ||||||||| | ||| ||||| ||| | ||| |    
T  8667073 agcagcctgaacagctgcaccataagcaacagcctcgtctgggttgatacccatgaataattccttccccttgaaatattctagcaattgttcctgcact 8667172  T
Q  364 ttgggaattctaga 377  Q
    |||||||| |||||    
T  8667173 ttgggaatcctaga 8667186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 3146880 - 3146968
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 314  Q
    ||||| ||||||||||| || | | | ||| ||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||    
T  3146880 accaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaacggcctcatcagggttgatgct 3146968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 8017917 - 8017794
Alignment:
Q  274 acagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattc 373  Q
    ||||| ||||||||||||||||||||||| ||||| || ||| |||| |  ||  |||| ||||| || |||||||| |||| | | | |||||||||||    
T  8017917 acagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctctttaccattgaagaaatcttgcaacagttgctgaactttgggaattc 8017818  T
Q  374 tagatgaacctccaacaaggacaa 397  Q
    ||| |||||| |||||||| ||||    
T  8017817 tagttgaaccgccaacaagaacaa 8017794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 8383630 - 8383577
Alignment:
Q  21 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||    
T  8383630 aaacaaacctaacaagttgttctcattagctttcaatctctcaccctcataaac 8383577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 8537683 - 8537740
Alignment:
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 314  Q
    |||||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||    
T  8537683 tcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgct 8537740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 13333882 - 13333838
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtt 308  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  13333882 agcagcctgaacagctgcaccataagcaacagcctcatctgggtt 13333838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 8383377 - 8383338
Alignment:
Q  277 gctgcaccataagcaacagcctcgtcggggtttatgctca 316  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  8383377 gctgcaccataagcaacagcctcgtcaggatttatgctca 8383338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 8601394 - 8601441
Alignment:
Q  27 acccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  8601394 acccaacaagttgttctcacttgcttttaatctctcgccttcataaac 8601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 305
Target Start/End: Original strand, 1301127 - 1301156
Alignment:
Q  276 agctgcaccataagcaacagcctcgtcggg 305  Q
    ||||||||||||||||||||||||||||||    
T  1301127 agctgcaccataagcaacagcctcgtcggg 1301156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 8569725 - 8569778
Alignment:
Q  21 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||| | ||||||||| |||||  |||||| ||||||||||||||||||    
T  8569725 aaacaaaccaagcaagttgttgtcactatcttttaatctctcaccctcataaac 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8581096 - 8581161
Alignment:
Q  3 aggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctc 68  Q
    ||||||| |||||| |  ||||||||||| ||||||||| ||||| ||| || |||||||||||||    
T  8581096 aggaggaacagagaaatcaaacaaacccagcaagttgttatcacttgctcttgttctctcaccctc 8581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 403
Target Start/End: Original strand, 8616329 - 8616474
Alignment:
Q  258 caacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttc 357  Q
    ||||||||||||||| || ||||| |||  |||||||||||| || || || ||| || ||||||||||| | || | |||||||||   |||||||| |    
T  8616329 caacaaagcagcctgaactgctgccccactagcaacagcctcatcaggattgatgttcttgcacaaatccttcccatcgaaaaagtcactcaatagttcc 8616428  T
Q  358 cgcattttgggaattctagatgaacctccaacaaggacaatttcat 403  Q
     ||| ||| ||||| ||||| || || || ||||| ||||| ||||    
T  8616429 tgcactttaggaatcctagacgagccaccgacaagaacaatatcat 8616474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 17259764 - 17259805
Alignment:
Q  138 aggaattggagtgttcttaggaatcactacactcatgacatc 179  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17259764 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 17267467 - 17267508
Alignment:
Q  138 aggaattggagtgttcttaggaatcactacactcatgacatc 179  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17267467 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 39985300 - 39985356
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgca 320  Q
    ||||||||| ||||| |||||||| ||||||||||| || || ||||||||| ||||    
T  39985300 agcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgca 39985356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 147 - 397
Target Start/End: Original strand, 35131993 - 35132243
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 246  Q
    ||||||| |||||||||| ||| |||||| |||||||  | |  |  ||||||| ||||| ||||||| |||    || ||||| ||||||||||| ||     
T  35131993 agtgttcctaggaatcaccacattcatgatatctcctactattgacctaccaagagacaaaggtgtaacatcctgtaacaccaactttggaacatttttt 35132092  T
Q  247 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtctt 346  Q
    ||||| | | |||||||||||||||| || ||||| |||||||| |||||||| |||||||| |||||| ||||||| ||| | || |||||||||| ||    
T  35132093 atgcctttactcaacaaagcagcctgaactgctgccccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagtttt 35132192  T
Q  347 gcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
    ||||||| | | ||| ||||||||| ||||| || ||||||||||| ||||    
T  35132193 gcaatagctgctgcactttgggaatcctagaagaccctccaacaagaacaa 35132243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 403
Target Start/End: Original strand, 30774835 - 30775045
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| || || | ||||| ||  ||||| |||||  ||||||| ||||| ||| |||| | ||||||||| |||||||| || | |||||    
T  30774835 ataccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaa 30774934  T
Q  293 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 392  Q
    | ||||| || || || |||||| ||||||||||| | || ||||| || |   ||||||||| | ||| ||||||||| ||||| ||||| || |||||    
T  30774935 ctgcctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaag 30775034  T
Q  393 gacaatttcat 403  Q
     ||||| ||||    
T  30775035 aacaatatcat 30775045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 9336430 - 9336314
Alignment:
Q  239 cattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaa 338  Q
    ||||||| | ||| ||| |||| | |||||| || |||||||||||||||||||||||||| || ||||| || | |||| | || ||| | ||||||||    
T  9336430 cattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatacccatgaataattccttccccttgaa 9336331  T
Q  339 aaagtcttgcaatagtt 355  Q
    ||| ||| |||||||||    
T  9336330 aaattctagcaatagtt 9336314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 403
Target Start/End: Original strand, 15594650 - 15594827
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    ||||| ||||||||||| || |  || ||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |    
T  15594650 accaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaatt 15594749  T
Q  326 ccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcat 403  Q
    || | |||| |||||| || | ||||||||   ||| ||||||||| ||||| || || ||||||| |||||| ||||    
T  15594750 cctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgacaatatcat 15594827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 396
Target Start/End: Complemental strand, 34467364 - 34467170
Alignment:
Q  202 gacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgt 301  Q
    ||||| ||||||| ||||| ||  ||||| ||||||||||| || | ||| | | ||||||||||||| |||||||||||  ||||||| |||||||| |    
T  34467364 gacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcat 34467265  T
Q  302 cggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggaca 396  Q
    | ||||| |||||  |||| | |||| |||| |||||||||||  ||||||| | | ||| ||||||||| ||||| || || || |||||||||    
T  34467264 cagggttgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggaca 34467170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 4679059 - 4678938
Alignment:
Q  276 agctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattcta 375  Q
    |||||||||||||||||||||||| || ||||| || ||| ||||||||||| | | ||| ||||||||||||||||| | | ||| ||||||||| ||     
T  4679059 agctgcaccataagcaacagcctcatctgggttgatactcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctc 4678960  T
Q  376 gatgaacctccaacaaggacaa 397  Q
    |||||||| || ||||| ||||    
T  4678959 gatgaaccacccacaagaacaa 4678938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 52549498 - 52549425
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctc 299  Q
    ||||| |||||||||||||  ||||| ||| ||||||| |||||||| |||||||| |||||||| ||| ||||    
T  52549498 accaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaacctc 52549425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 397
Target Start/End: Complemental strand, 16658102 - 16657898
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||||||||| || |||| ||||| ||| ||||||| ||| |||||||| | ||| ||| |||| | |||||| || ||||||||||| |||||||    
T  16658102 ataccaagcgacaatggggtaacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaa 16658003  T
Q  293 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 392  Q
    |||| || || ||||| || ||  |||| |||||| | ||||||||||||||||||||||| | | ||| ||||||||| |||||||| || || |||||    
T  16658002 cagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagatcctgcactttgggaatcctagatgagccacccacaag 16657903  T
Q  393 gacaa 397  Q
     ||||    
T  16657902 aacaa 16657898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 314
Target Start/End: Original strand, 43624957 - 43625116
Alignment:
Q  155 taggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatc 254  Q
    |||||||||| |||||||||||| |||| ||  |  | |||||||| ||||| || |||| ||||| ||  ||||| |||||||||||||| ||||| |     
T  43624957 taggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgccttt 43625056  T
Q  255 aatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgct 314  Q
    | |||| | ||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  43625057 actcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgct 43625116  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 353
Target Start/End: Complemental strand, 12246037 - 12245831
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 246  Q
    ||||||| | |||||||| |||||||||||||| ||| || |  |  ||||||  ||||| || |||| |||   ||| ||||||||||||||||||||     
T  12246037 agtgttccttggaatcaccacactcatgacatcccctattattgacctaccaatggacaaaggagtaacatcctgcaacaccaaatttggaacattctta 12245938  T
Q  247 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtctt 346  Q
    |   | | | ||||||||||||| || |||||||| |||||||||||||||||||| ||||| |||||| ||||||| ||| | || ||||||||||| |    
T  12245937 acatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcct 12245838  T
Q  347 gcaatag 353  Q
    | |||||    
T  12245837 gtaatag 12245831  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 407
Target Start/End: Complemental strand, 16662577 - 16662363
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| || ||||  |||| ||  ||||| |||||||||| ||| ||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 16662478  T
Q  293 cagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaag 392  Q
    ||||||| || ||||| |||||| ||||||| ||| | || ||||| ||||   |||||| || | ||| ||| ||||| ||||| || || || |||||    
T  16662477 cagcctcatcagggttgatgctcttgcacaactccttcccattgaagaagttacgcaataattcctgcacttttggaatcctagacgagcccccgacaag 16662378  T
Q  393 gacaatttcatgtac 407  Q
     ||||| ||||||||    
T  16662377 aacaatatcatgtac 16662363  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 353
Target Start/End: Original strand, 11999024 - 11999151
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    |||||||||||||||||||| |   | ||| ||||||||||||| || |||||||| |||||||| |||||||| || ||||| |||||| ||||||| |    
T  11999024 accaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaact 11999123  T
Q  326 ccatacccttgaaaaagtcttgcaatag 353  Q
    || | || ||||||||||| || |||||    
T  11999124 ccttcccgttgaaaaagtcatgtaatag 11999151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 344
Target Start/End: Original strand, 14703024 - 14703142
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaat 325  Q
    ||||| || ||||||||||||| | | ||| |||||||||||||||| |||||||| |||||||| ||||| || || ||||| |||||  ||||||| |    
T  14703024 accaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcagggttaatgctgttgcacaact 14703123  T
Q  326 ccatacccttgaaaaagtc 344  Q
    || | |||| |||||||||    
T  14703124 ccttcccctggaaaaagtc 14703142  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 7541873 - 7541960
Alignment:
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtc 344  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| || || || |||||| ||||||| ||| | || |||||||||||    
T  7541873 tcaacaatgcagcctgaacagctgccccataagcaacagcctcatcaggattaatgctcttgcacaagtcctttccattgaaaaagtc 7541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 12234349 - 12234482
Alignment:
Q  269 cctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccatacccttgaaaaagtcttgcaatagtttccgcattttggg 368  Q
    |||| ||||||||  |||||||||| ||||| || ||||| || ||| ||||||  ||| | ||||||||||| || |||||||||| | ||| ||||||    
T  12234349 cctgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttggg 12234447  T
Q  369 aattctagatgaacctccaacaaggacaatttcat 403  Q
    ||| ||||| || || |||| |||||||| |||||    
T  12234448 aatcctagaggacccgccaataaggacaacttcat 12234482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 397
Target Start/End: Complemental strand, 12259132 - 12258962
Alignment:
Q  227 ccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatc 326  Q
    |||| ||||||||||||| |||  | ||| | |||||||||||||| | ||| || ||| |||| |||||||| || || || |||||| ||||||| ||    
T  12259132 ccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacagcctcatcaggattaatgctcttgcacaactc 12259033  T
Q  327 catacccttgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaa 397  Q
      | ||||||||||| || || ||||| | | ||| |||| |||| ||||| || || || ||||||||||    
T  12259032 tttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaaggacaa 12258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 403
Target Start/End: Original strand, 12528129 - 12528297
Alignment:
Q  235 ggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatccataccct 334  Q
    |||||| |||| ||||| ||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| || | || ||| | ||||    
T  12528129 ggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgccct 12528228  T
Q  335 tgaaaaagtcttgcaatagtttccgcattttgggaattctagatgaacctccaacaaggacaatttcat 403  Q
    ||||||| || |||||||| | |  || ||||||||| ||||| || || |||||||| ||||| ||||    
T  12528229 tgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccaccaacaagtacaatatcat 12528297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 43744438 - 43744533
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcggggtttatgctcatgcacaaatcc 327  Q
    |||||||| || || | ||| ||| |||||||||||||||||||||||||||||  |||||| ||||| || ||||| ||| || | |||||||||    
T  43744438 tttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactgcctcatcagggttaatgttcttacacaaatcc 43744533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 28219501 - 28219623
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| ||||||| ||||  ||  ||||| || ||||| || || | ||| ||| ||||||||||||||||||||||||||||||||||||    
T  28219501 ataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaa 28219600  T
Q  293 cagcctcgtcggggtttatgctc 315  Q
    ||||||| || ||||| ||||||    
T  28219601 cagcctcatcagggttaatgctc 28219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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