View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20624_low_1 (Length: 668)

Name: NF20624_low_1
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20624_low_1
NF20624_low_1
[»] chr6 (2 HSPs)
chr6 (164-656)||(31523233-31523725)
chr6 (4-169)||(31523033-31523198)
[»] chr8 (14 HSPs)
chr8 (298-565)||(5316630-5316897)
chr8 (289-565)||(5309982-5310258)
chr8 (301-565)||(14946202-14946466)
chr8 (289-565)||(5286916-5287192)
chr8 (298-565)||(5279198-5279465)
chr8 (298-563)||(15128616-15128881)
chr8 (316-561)||(5347901-5348146)
chr8 (32-160)||(14946022-14946150)
chr8 (38-169)||(5278985-5279116)
chr8 (38-143)||(15128938-15129043)
chr8 (38-143)||(5286771-5286876)
chr8 (38-129)||(5316978-5317069)
chr8 (41-143)||(5310303-5310405)
chr8 (41-153)||(5299420-5299537)
[»] chr1 (1 HSPs)
chr1 (181-235)||(23219688-23219742)
[»] chr5 (1 HSPs)
chr5 (175-215)||(19167631-19167671)


Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 164 - 656
Target Start/End: Original strand, 31523233 - 31523725
Alignment:
Q  164 gaaacactgacacagacaccggacacgacgctgacacagatacgttgacaccaatgataattttagaaaatgaagtaattcaatgcaaacatatgcgttt 263  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523233 gaaacactgacacagacaccagacacgacgctgacacagatacgttgacaccaatgataattttagaaaatgaagtaattcaatgcaaacatatgcgttt 31523332  T
Q  264 ggacaccgacttttgttgaaaaaggaaagtagaaaagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaa 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523333 ggacaccgacttttgttgaaaaaggaaagtagaaaagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaa 31523432  T
Q  364 ttctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttc 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523433 ttctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttc 31523532  T
Q  464 atctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgca 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523533 atctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgca 31523632  T
Q  564 aatgatgtcaaaattagatttcaatgaagggcttattggttgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacacaagtgat 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523633 aatgatgtcaaaattagatttcaatgaagggcttattggttgcaaaaccctctgatggaaggcgtgtttggtgtccgacacgacacaagtgat 31523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 31523198 - 31523033
Alignment:
Q  4 taccatctcttgattcataatttttgttggttactaaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31523198 taccatctcttgattcataatttttgttggttactaaagggaaactggtggaatatgatgagccttcaaagctaatggaaaccaactcttcattctctaa 31523099  T
Q  104 gctggtagctgagtattggtctagctacaagaagagttccatcccaaacactagcagacagaaaca 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31523098 gctggtagctgagtattggtctagctacaagaagagttccatcccaaacactagcatacagaaaca 31523033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 298 - 565
Target Start/End: Complemental strand, 5316897 - 5316630
Alignment:
Q  298 aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc 397  Q
    ||||||||||| | | |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||     
T  5316897 aagaataaggattaagcataccataagataagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctga 5316798  T
Q  398 aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||  |||||||||| |||||     
T  5316797 aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtaga 5316698  T
Q  498 actcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa 565  Q
    ||||||||||||||||||| ||| |  || || |||||||||||||||||||||||||||||||||||    
T  5316697 actcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcactcactgcaaa 5316630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 289 - 565
Target Start/End: Complemental strand, 5310258 - 5309982
Alignment:
Q  289 aaagtagaaaagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagt 388  Q
    |||||| | ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |  ||||| || ||    
T  5310258 aaagtatagaagaataaggaaataacataccataagataggaccatgaccatgtcactgtctatgacagttggaactctgtgagccacagttatgactgt 5310159  T
Q  389 gcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctc 488  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||| ||||||||||| ||||| | ||||||||| |||    
T  5310158 gcattctgcaaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagaggcagtagcttcatccagaacaagaattttgtttctc 5310059  T
Q  489 ttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa 565  Q
    || ||||| ||||||||||||||||||| ||| |  || |  |||||||||||||||||||||||||||||||||||    
T  5310058 ttaagtagaactcttccaagacaaaacaattgcctttgtctcaagctccaatttccaccttcatcactcactgcaaa 5309982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 301 - 565
Target Start/End: Original strand, 14946202 - 14946466
Alignment:
Q  301 aataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgcaaa 400  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||  ||||| || ||||||||| ||||    
T  14946202 aataaggaattaacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttcaaa 14946301  T
Q  401 ttcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtact 500  Q
     |||||||| |||| |||||||||||||||||||||||| || |||||||| || |||||||| || | ||| | ||||||||||||||| ||||| |||    
T  14946302 ctcttgtctgattattctttgtagaatggcatctgtggctgaatcaatggatgcagtagcttcgtccaaaacaagaattttgttcctcttaagtagaact 14946401  T
Q  501 cttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa 565  Q
    ||||| || ||||||| |||||| || || |||||||||||||||||||||||||||||||||||    
T  14946402 cttccgaggcaaaacaattggcgttgtcccaagctccaatttccaccttcatcactcactgcaaa 14946466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 289 - 565
Target Start/End: Original strand, 5286916 - 5287192
Alignment:
Q  289 aaagtagaaaagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagt 388  Q
    |||||||| |||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |  ||||| || ||    
T  5286916 aaagtagagaagattaaggaaataacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagccacagttataactgt 5287015  T
Q  389 gcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctc 488  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| ||||| | |||| |||| |||    
T  5287016 gcattctgaaaattcttgtctaattactctttgtagaattgcatccgtcgcagagtcaatggatgctgttgcttcatccagaacaagaattctgtttctc 5287115  T
Q  489 ttgagtagtactcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa 565  Q
    || ||||| ||||||||||| ||||||| ||| |  || || ||||||||||||||||||||||| |||||||||||    
T  5287116 ttaagtagaactcttccaaggcaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaa 5287192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 298 - 565
Target Start/End: Original strand, 5279198 - 5279465
Alignment:
Q  298 aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc 397  Q
    ||||||||||| | | |||||||||||||| || ||  |||||||||||||||||||||||||||| ||||||||| |  ||||| || ||||||||| |    
T  5279198 aagaataaggattaagcataccataagataagaccagaaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattcttc 5279297  T
Q  398 aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt 497  Q
     ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| | |||| | || || || |||||     
T  5279298 gaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatggatgctgttgcttcatctagaacaagaattctatttcttttaagtaga 5279397  T
Q  498 actcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa 565  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  5279398 actcttccaaggcaaaacagttgccgctgtcctaagctccaatttccaccttcatcactcactgcaaa 5279465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 298 - 563
Target Start/End: Complemental strand, 15128881 - 15128616
Alignment:
Q  298 aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc 397  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||  ||||| || ||||||||| |    
T  15128881 aagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttc 15128782  T
Q  398 aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt 497  Q
    ||||||||||||||||| |||||||||||| ||||||||||| || |||||||| || ||||||||||| | ||| | |||| ||||||| || |||||     
T  15128781 aaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtaga 15128682  T
Q  498 actcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgca 563  Q
    |||||||| || ||||| | |||||| || || |||||||||||||||||||||||||||||||||    
T  15128681 actcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactgca 15128616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 316 - 561
Target Start/End: Original strand, 5347901 - 5348146
Alignment:
Q  316 taccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgcaaattcttgtctaattac 415  Q
    |||||||||| || | ||||||||| |||||||| || |||||||||| ||| ||||| |  ||||| || ||||||||||||||||||||||||||||     
T  5347901 taccataagaaagaaccatgaccatatcactgtcaataacagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattat 5348000  T
Q  416 tctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagtactcttccaagacaaaac 515  Q
    | |||||||||| |||||||||||||| ||||| ||||| ||||||||||| | ||||| |||||| || || || || || ||||||||||| ||||||    
T  5348001 tttttgtagaatagcatctgtggcagaatcaatagaggcagtagcttcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaac 5348100  T
Q  516 agttggcgctgccctaagctccaatttccaccttcatcactcactg 561  Q
    | ||| |  || || | |||||||||| | ||||||| ||||||||    
T  5348101 aattgtctttggcccatgctccaattttccccttcattactcactg 5348146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 14946150 - 14946022
Alignment:
Q  32 ggttactaaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagctac 131  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| |||| |    
T  14946150 ggttattaaagggaaactggtggaatatgatgaaccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtccagctgc 14946051  T
Q  132 aagaagagttccatcccaaacactagcag 160  Q
    | |||||||||| ||||||| | ||||||    
T  14946050 aggaagagttccttcccaaatattagcag 14946022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 5279116 - 5278985
Alignment:
Q  38 taaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagctacaagaag 137  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||| | || ||||    
T  5279116 taaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagttgcaggaag 5279017  T
Q  138 agttccatcccaaacactagcagacagaaaca 169  Q
    | |||| | ||||||| |||||||||| ||||    
T  5279016 aattcccttccaaacattagcagacagcaaca 5278985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 15128938 - 15129043
Alignment:
Q  38 taaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagctacaagaag 137  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  15128938 taaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaag 15129037  T
Q  138 agttcc 143  Q
    | ||||    
T  15129038 aattcc 15129043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 5286876 - 5286771
Alignment:
Q  38 taaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagctacaagaag 137  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||| ||||||||||| | || ||||    
T  5286876 taaagggaaacttgtggaatatgatgagccttcaaagctaatggatacaaactcatcattctctaagctggtagctgaatattggtctagttgcaggaag 5286777  T
Q  138 agttcc 143  Q
    ||||||    
T  5286776 agttcc 5286771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 5316978 - 5317069
Alignment:
Q  38 taaagggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagct 129  Q
    |||||||| | || ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||    
T  5316978 taaagggaaagtgatggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagct 5317069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 5310303 - 5310405
Alignment:
Q  41 agggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagctggtagctgagtattggtctagctacaagaagagt 140  Q
    ||||| ||| |||||||||||||||||||||||||||||| | |  |||||||||||||||||| |||||||||| ||||||||||||| || |||||||    
T  5310303 agggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcattctctaagttggtagctgaatattggtctagctgcaggaagagt 5310402  T
Q  141 tcc 143  Q
    |||    
T  5310403 tcc 5310405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 5299420 - 5299537
Alignment:
Q  41 agggagactggtggaatatgatgagccttcaaagctaatggaaatcaactcttcattctctaagct-----ggtagctgagtattggtctagctacaaga 135  Q
    ||||| ||| |||||||||||||||||||||||||||||| | |  ||||||||| |||||||| |     ||||||||| ||||||||||||| || ||    
T  5299420 agggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcagtctctaagttaagttggtagctgaatattggtctagctgcagga 5299519  T
Q  136 agagttccatcccaaaca 153  Q
    || ||||| |||||||||    
T  5299520 agggttccttcccaaaca 5299537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 23219742 - 23219688
Alignment:
Q  181 accggacacgacgctgacacagatacgttgacaccaatgataattttagaaaatg 235  Q
    |||||||||||  |||||||| | | |||||||||||||||||||| ||||||||    
T  23219742 accggacacgatactgacacaaacatgttgacaccaatgataatttgagaaaatg 23219688  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 19167671 - 19167631
Alignment:
Q  175 acagacaccggacacgacgctgacacagatacgttgacacc 215  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  19167671 acagacaccagacacgacactgacacagacacgttgacacc 19167631  T

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