View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_low_10 (Length: 320)
Name: NF20624_low_10
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 24453901 - 24454028
Alignment:
| Q |
118 |
gttttacctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttt |
217 |
Q |
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| T |
24453901 |
gttttagctctatttatagagtactgaactatttgtaatggtatgtttgatgttataaacatatttctgtctttcaatataacatttccataatactttt |
24454000 |
T |
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| Q |
218 |
tctctcctatccctataaaaccaacatc |
245 |
Q |
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| T |
24454001 |
tctctcctatccctataaaaccaacatc |
24454028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 24453826 - 24453877
Alignment:
| Q |
67 |
ttagtgagttgtttttcaattatgttttgttttaagggcaataattttaggg |
118 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24453826 |
ttagggagttgtttttcaattatgttttgttttaaaggcaataattttaggg |
24453877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 13457814 - 13457933
Alignment:
| Q |
125 |
ctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcc |
224 |
Q |
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| T |
13457814 |
ctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtcttccaatatatcatttccataatactttttctctcg |
13457913 |
T |
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| Q |
225 |
tatccc-tataaaaccaaca |
243 |
Q |
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| T |
13457914 |
tatcccttttaaaaccaaca |
13457933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 31233594 - 31233476
Alignment:
| Q |
125 |
ctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcc |
224 |
Q |
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||||||||||| || ||| || | ||||||||||| || |||| ||||||||||||||| ||||| |||||| ||||| ||||| |||||||||| |
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| T |
31233594 |
ctctatttataaagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttttgtctacaaatatatcattttcataaatttttttctctca |
31233495 |
T |
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| Q |
225 |
tatccctataaaaccaaca |
243 |
Q |
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||||||| ||||||||||| |
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| T |
31233494 |
tatccctttaaaaccaaca |
31233476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 31233682 - 31233625
Alignment:
| Q |
61 |
gagacattagtgagttgtttttcaattatgttttgttttaagggcaataattttaggg |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
31233682 |
gagatattagtgagttgtttttcaattatgttttgttttgaagacaataattttaggg |
31233625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 13457727 - 13457782
Alignment:
| Q |
62 |
agacattagtgagttgtttttcaattatgttttgttttaagggcaataattttagg |
117 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| | |||||||||||| |
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| T |
13457727 |
agacattagtgagttgtttttcagttatcttttgttttaaagataataattttagg |
13457782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 23233859 - 23233752
Alignment:
| Q |
125 |
ctctatttatagagtacttaactatt-tgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctc |
223 |
Q |
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|||||||||||| | ||| || |||| ||||||||| ||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
23233859 |
ctctatttatagggcactaaagtattgtgtaatggtgtgtttgatgttataaacttatttctgtcttctaatatatcatttccataatactttttctctc |
23233760 |
T |
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| Q |
224 |
ctatccct |
231 |
Q |
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||||||| |
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| T |
23233759 |
atatccct |
23233752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 33330676 - 33330755
Alignment:
| Q |
162 |
gtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcctatccctataaaaccaaca |
243 |
Q |
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|||||| |||||||||||||||||||||| | |||| |||||||||| ||| ||||||||| ||| ||| ||||||||||| |
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| T |
33330676 |
gtttgatgttataaacatatttctgtcttccgatatgtcatttccatattac-ttttctctcatat-cctttaaaaccaaca |
33330755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 23233946 - 23233891
Alignment:
| Q |
61 |
gagacattagtgagttgtttttcaattatgttttgttttaagggcaataattttagg |
117 |
Q |
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| T |
23233946 |
gagacatcagtgagttgtttt-cagttatgttttgttttaaagacaataattttagg |
23233891 |
T |
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