View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_low_12 (Length: 251)
Name: NF20624_low_12
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 34732150 - 34732391
Alignment:
| Q |
10 |
aagaatatctataggtatgtattcagttgagaaatcataaaaacacacgtattaggaatatttgaaacatctaaaaagtgtgagccagctaagttttcnn |
109 |
Q |
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| T |
34732150 |
aagaatatctataggtatgtattcagttgagaaatcataaaaacacacgtattaggaatatttgaaacatctaaaaagtgtgagccagctaagttttcaa |
34732249 |
T |
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| Q |
110 |
nnnnnttaaaataaatgaacactagtactaattgccaaggtaaaaaatggattaatcttacaaaacacaactcaactcaacagttggtgattgttattga |
209 |
Q |
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| T |
34732250 |
aaaaattaaaataaatgaacactagtactaattgccaaggtaaaaaatggattaatcttacaaaacacaactcaactcaacagttagtgattgttattga |
34732349 |
T |
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| Q |
210 |
atcaaagcactgttgcagcatagagggatatgaagagaaaaa |
251 |
Q |
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| T |
34732350 |
atcaaagcactgttgcagcatagagggatatgaagaaaaaaa |
34732391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 34727793 - 34727849
Alignment:
| Q |
179 |
actcaactcaacagttggtgattgttattgaatcaaa-gcactgttgcagcatagag |
234 |
Q |
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| T |
34727793 |
actcaactcaacagttagtgattgctattgaatcaaatgcacaattgcagcatagag |
34727849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 10437738 - 10437687
Alignment:
| Q |
164 |
atcttacaaaacacaactcaactcaacagttggtgattgttattgaatcaaa |
215 |
Q |
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| T |
10437738 |
atcttacaaaacacaactcagctcaatagttagtgattgttattcaatcaaa |
10437687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 10451448 - 10451397
Alignment:
| Q |
164 |
atcttacaaaacacaactcaactcaacagttggtgattgttattgaatcaaa |
215 |
Q |
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| T |
10451448 |
atcttacaaaacacaactcagctcaatagttagtgattgttattcaatcaaa |
10451397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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