View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_low_2 (Length: 545)
Name: NF20624_low_2
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 28168117 - 28168411
Alignment:
| Q |
12 |
aatactcgaaaataatgagaggtccaataatacgaatggtatttgttaatgatgcaacaagttgcaaataagtgaatttagcttaggatgctacctcatt |
111 |
Q |
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| T |
28168117 |
aatactcgaaaataatgagaggtccaataatacgaatggtatttgttaatgatgcaacaagttgcaaataagtgaatttagcttaggatgctacctcatt |
28168216 |
T |
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| Q |
112 |
gttacatggaaaacctgcatgaagaattgcaaggtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaagtctaa |
211 |
Q |
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| T |
28168217 |
gttacatggaaaacctgcatgaagaattgtaaagtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaactctaa |
28168316 |
T |
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| Q |
212 |
taaaaaccgtaagatgaaaattgtc-aaaatttattggattccattagacaagcatgaataattatctctagcacaattaaagctactaaccatc |
305 |
Q |
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| T |
28168317 |
taaaaaccgtaagatgaaaattgtcaaaaatttattggattccattagacaagcatgaataattatctctagcacaatcaaagctactaaccatc |
28168411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 34 - 391
Target Start/End: Original strand, 28171787 - 28172141
Alignment:
| Q |
34 |
tccaataatacgaatggtatttgttaatgatgcaacaagtt-gcaaataagtgaatttagcttaggatgctacctcattgttacatggaaaacctgcatg |
132 |
Q |
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| T |
28171787 |
tccaataatacgaatggtatttgttaatgatgcaacaagtttgcaaataggtgaatttagtttaggatgctacctcattgttacatggaatacctgcatg |
28171886 |
T |
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| Q |
133 |
aagaattgcaaggtgtgtttaatgatgttaataataataacatatgtgaagcttgtcaactaatagctactaagtctaataaaaaccgtaagatgaaaat |
232 |
Q |
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| T |
28171887 |
aagaattgcaaggtgtgtttaatgatgttgataatag---cctatgtgaaggttgtcaactaatagctactaactctaatgaaaaccgtgagaagaaaat |
28171983 |
T |
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| Q |
233 |
tgtcaaaatttattggattccattagacaagcatgaataattatctctagcacaattaaagctactaaccatcgtaaaataccaccccatacattttcaa |
332 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||| | | |
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| T |
28171984 |
tgtcaaactttattggactccattagacaagcatgaataattatctctaccacaatcgaagctactaaccaccgtaaaataccaccccacacatttccca |
28172083 |
T |
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| Q |
333 |
agaaaacacaataaatgaaaagatgctgaagactttcttcctttttgtacatacctaca |
391 |
Q |
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| |||||||||| |||||||| ||| |||| ||||||||||||||| ||| |||||||| |
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| T |
28172084 |
ataaaacacaatcaatgaaaatatgttgaaaactttcttccttttt-tacctacctaca |
28172141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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