View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_low_6 (Length: 401)
Name: NF20624_low_6
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 27984970 - 27985335
Alignment:
| Q |
14 |
gaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaacatatataatttcgcc |
113 |
Q |
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| T |
27984970 |
gaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaacatatataatctcgcc |
27985069 |
T |
|
| Q |
114 |
cccgccattcaaattttttggatccgttcctggtcaaacacatattctcatccctatatattcttatgttgtttttgtcaacctcttaactaaaattcaa |
213 |
Q |
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| T |
27985070 |
cccaccattcaaattttttggatccgttcctggtcaaacacataatctcatccc--tatattcttaggttg-ttttgtcaacctctcaactaaaattcaa |
27985166 |
T |
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| Q |
214 |
atcacgtgcgaattgtgtttatttattgctgttattaatattattgttttccctgtaacgatagatatgtaagcgaaattatgcaaattgcagagcaaaa |
313 |
Q |
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|||||||||||||| ||| || ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27985167 |
atcacgtgcgaattttgtata---gttgttgttattaatattattgttttccatgaaacgatagatatgtaagcgaaattatgcaaattgcagggcaaaa |
27985263 |
T |
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| Q |
314 |
taaagatgttagcttcctcacaaatcttccaaatgcaacccaaaagctaaatattttcaatgctgatcttag |
385 |
Q |
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| T |
27985264 |
gaaagatgttagcttcctcacagatcttccaaatgcatctcaaaagctacaaattttcaatgctgatcttag |
27985335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 385
Target Start/End: Original strand, 27994401 - 27994517
Alignment:
| Q |
269 |
taacgatagatatgtaagcgaaattatgcaaattgcagagcaaaataaagatgttagcttcctcacaaatcttccaaatgcaacccaaaagctaaatatt |
368 |
Q |
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| T |
27994401 |
taacgatatctatgtaagcgaaattatgtatatagcagggcaaaacaaagatgttagcttcctcaccaatcttccaaatgcaacccaaaagttaaatatt |
27994500 |
T |
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| Q |
369 |
ttcaatgctgatcttag |
385 |
Q |
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||||||||||||||||| |
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| T |
27994501 |
ttcaatgctgatcttag |
27994517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 27958951 - 27959025
Alignment:
| Q |
309 |
caaaataaagatgttagcttcctcacaaatcttccaaatgcaacccaaaagctaaatattttcaatgctgatctt |
383 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||| | ||||| ||| | |||||||| ||||||||| |
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| T |
27958951 |
caaaagaaagatgttagctacctcacaaatcttccaaatgcatctcaaaacctacaaattttcaacgctgatctt |
27959025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 28013125 - 28013192
Alignment:
| Q |
315 |
aaagatgttagcttcctcacaaatcttccaaatgcaacccaaaagctaaatattttcaatgctgatct |
382 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||| | |||| ||||||||| |
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| T |
28013125 |
aaagatgttagcttcctcacaaatcttccaggtgcatcccaaaagctaaaattcttcagtgctgatct |
28013192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 28005186 - 28005234
Alignment:
| Q |
315 |
aaagatgttagcttcctcacaaatcttccaaatgcaacccaaaagctaa |
363 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
28005186 |
aaagatgttagcttcctcacaaatcttccaggtgcatctcaaaagctaa |
28005234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 35109120 - 35109077
Alignment:
| Q |
57 |
ttttctagaacttcaacatccagttttgagccaaatttcaacat |
100 |
Q |
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| T |
35109120 |
ttttcgagaacttcaacatctaattttgagccaaatttcaacat |
35109077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 23479605 - 23479677
Alignment:
| Q |
26 |
tgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaatttcaaca |
99 |
Q |
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| T |
23479605 |
tgccacaatctcattctcacg-tgccactgcttttccagaacttcaacatccaattttgatccaaatatcaaca |
23479677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 31512900 - 31512820
Alignment:
| Q |
13 |
tgaaccaaaatcttgccacaatctcatgcttacggtgccacaatttttctagaacttcaacatccagttttgagccaaattt |
94 |
Q |
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| T |
31512900 |
tgaaccaaaatcgtgccacaatcgcatgttcatg-tgccacgatttttccaaaacttcaacatataattttgagccaaattt |
31512820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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