View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20624_low_7 (Length: 391)
Name: NF20624_low_7
Description: NF20624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20624_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 51959328 - 51959229
Alignment:
| Q |
292 |
tttgcttcacaacttctatttccaatttctcgtccctccaccttgacaatatcattccaaacttgttagtactctccttgtctcaacaatttctacattc |
391 |
Q |
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| T |
51959328 |
tttgcttcacaacttctatttccaatttctcgtccctctaccttgataatatcattccaaacttgttagtactctccttgtctcaacaatttctacattc |
51959229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 34704452 - 34704568
Alignment:
| Q |
268 |
ctaagccataagcgctaactagcatttgcttcacaacttctatttccaatttctcgtccctccaccttgacaatatcattccaaacttgttagtactctc |
367 |
Q |
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| T |
34704452 |
ctaagccataagggataactagtatttgcttcacaacttctttttccaatatctcgtccctccaccttgacaatatcattccaagcttgtt-gtactctc |
34704550 |
T |
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| Q |
368 |
cttgtctcaacaatttct |
385 |
Q |
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| T |
34704551 |
cttgtctcaacaatttct |
34704568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 34704236 - 34704279
Alignment:
| Q |
89 |
agaaaaggaacattctagtattgaggtgactaggcaggaattcaa |
133 |
Q |
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| T |
34704236 |
agaaaaggaacatt-tagtattaaggtgacaaggcaggaattcaa |
34704279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 20193728 - 20193770
Alignment:
| Q |
91 |
aaaaggaacattctagtattgaggtgactaggcaggaattcaa |
133 |
Q |
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| T |
20193728 |
aaaaggaacattctagtgtttaggtgactaggcagtaattcaa |
20193770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 20203655 - 20203697
Alignment:
| Q |
91 |
aaaaggaacattctagtattgaggtgactaggcaggaattcaa |
133 |
Q |
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| T |
20203655 |
aaaagcaacattctagtatttaggtgactaggcagtaattcaa |
20203697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 22087751 - 22087793
Alignment:
| Q |
91 |
aaaaggaacattctagtattgaggtgactaggcaggaattcaa |
133 |
Q |
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| T |
22087751 |
aaaaggaacattctagtgtttaggtgactaggcagtaattcaa |
22087793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 22097678 - 22097720
Alignment:
| Q |
91 |
aaaaggaacattctagtattgaggtgactaggcaggaattcaa |
133 |
Q |
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| T |
22097678 |
aaaagcaacattctagtatttaggtgactaggcagtaattcaa |
22097720 |
T |
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