View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_high_12 (Length: 464)

Name: NF20625_high_12
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_high_12
NF20625_high_12
[»] chr1 (3 HSPs)
chr1 (187-452)||(27463106-27463382)
chr1 (18-76)||(27462904-27462962)
chr1 (74-127)||(27462989-27463042)
[»] chr8 (4 HSPs)
chr8 (18-70)||(13888474-13888526)
chr8 (18-70)||(16345342-16345394)
chr8 (18-68)||(29359550-29359600)
chr8 (18-58)||(1156435-1156475)
[»] chr5 (3 HSPs)
chr5 (18-70)||(21213814-21213866)
chr5 (26-59)||(4701280-4701313)
chr5 (18-70)||(5985104-5985156)
[»] chr3 (6 HSPs)
chr3 (26-70)||(23631427-23631471)
chr3 (18-72)||(21490236-21490290)
chr3 (18-68)||(31787225-31787275)
chr3 (18-70)||(28228889-28228941)
chr3 (26-63)||(1779025-1779062)
chr3 (18-59)||(5030156-5030197)
[»] scaffold0373 (1 HSPs)
scaffold0373 (18-63)||(7048-7093)
[»] chr4 (5 HSPs)
chr4 (18-63)||(6829327-6829372)
chr4 (18-64)||(1348632-1348678)
chr4 (29-70)||(18881204-18881245)
chr4 (27-68)||(31860606-31860647)
chr4 (18-70)||(48336534-48336586)
[»] chr7 (2 HSPs)
chr7 (18-56)||(47080782-47080820)
chr7 (18-59)||(27248703-27248744)
[»] chr6 (1 HSPs)
chr6 (18-64)||(16120731-16120777)
[»] chr2 (3 HSPs)
chr2 (18-63)||(8924592-8924637)
chr2 (26-70)||(2544009-2544053)
chr2 (18-70)||(33046081-33046133)
[»] scaffold0204 (1 HSPs)
scaffold0204 (18-70)||(24056-24108)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 187 - 452
Target Start/End: Original strand, 27463106 - 27463382
Alignment:
Q  187 gacattacaggaagtagaagcatccctatcatttccactcgatcctaaaattcttgagatgatataatgccaagttgggtggtttgcatttagaattctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27463106 gacattacaggaagtagaagcatccctatcatttccactcgatcctaaaattcttgagatgatataatgccaagttgggtggtttgcatttagaattctg 27463205  T
Q  287 tgcctcaagttatttgctttctttctgagtttttaatttttgttttcgggaatctagttcactaaagtttgattccttggctttg------------tct 374  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            |||    
T  27463206 tgcct-aagttatttgctttctttctgagttttttatttttgttttcgggaatctagttcactaaagtttgattccttggctttgtctactattgtatct 27463304  T
Q  375 gttgacctgcatgcattatttaaaagtgcctttacatatgcttttccatttcgtttatttctacataagccaaagttc 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27463305 gttgacctgcatgcattatttaaaagtgcctttacatatgcttttccatttcgtttatttctacataagccaaagttc 27463382  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27462904 - 27462962
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgtataacg 76  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27462904 ttttctagtagattagtaaagttatttgagatcaaaattgtgcattgatatgtataacg 27462962  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 27462989 - 27463042
Alignment:
Q  74 acggatggagtactacacaaatacaaacattggtttgaaataaatcaattaatg 127  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27462989 acggatggagtactacacagatacaaacattggtttgaaataaatcaattaatg 27463042  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13888526 - 13888474
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||| |||||    
T  13888526 ttttctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgt 13888474  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 16345342 - 16345394
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| |||||||||||| |||||| |||||||||||||| ||||||||||    
T  16345342 ttttctaatagattagtaaaattatttaagatcaaaattgtgcattgatatgt 16345394  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29359600 - 29359550
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatat 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||| ||||    
T  29359600 ttttctaatagattagtaaagttatttaagatcaaaattgtgcattaatat 29359550  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1156475 - 1156435
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgt 58  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  1156475 ttttctaatagattagtaaagttatttaagatcaaaattgt 1156435  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 21213814 - 21213866
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| || |||||||||||||||| |||||||||||||| ||||||||||    
T  21213814 ttttctaataaattagtaaagttatttaagatcaaaattgtgcattgatatgt 21213866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 4701280 - 4701313
Alignment:
Q  26 tagattagtaaagttatttgagatcaaaattgtg 59  Q
    ||||||||||||||||||| ||||||||||||||    
T  4701280 tagattagtaaagttatttaagatcaaaattgtg 4701313  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 5985104 - 5985156
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| ||||||||||||| ||||| |  |||||||||||||||| |||||    
T  5985104 ttttctaatagattagtaaagctatttaaattcaaaattgtgtattggtatgt 5985156  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 23631471 - 23631427
Alignment:
Q  26 tagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  23631471 tagataagtaaagttatttaagatcaaaattgtgtattgatatgt 23631427  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 21490236 - 21490290
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgtat 72  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||  |||||||    
T  21490236 ttttctaatagattagtaaagttatttaagatcaaaattgtgcatttgtatgtat 21490290  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 31787225 - 31787275
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatat 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||| || |||||    
T  31787225 ttttctaatagattagtaaagttatttaagatcaaaattgtgcatcgatat 31787275  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 28228941 - 28228889
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||    
T  28228941 ttttctaatagaatagtaaagttatttaagatcaaagttgtgcattgatatgt 28228889  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 1779025 - 1779062
Alignment:
Q  26 tagattagtaaagttatttgagatcaaaattgtgtatt 63  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  1779025 tagattagtgaagttatttaagatcaaaattgtgtatt 1779062  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 5030156 - 5030197
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtg 59  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  5030156 ttttctaagagattagtaaagttatttaagatcaaaattgtg 5030197  T

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Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7048 - 7093
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtatt 63  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||    
T  7048 ttttctaagagattagtaaagttatttaagatcaaaattgtgtatt 7093  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6829372 - 6829327
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtatt 63  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||    
T  6829372 ttttctaagagattagtaaagttatttaagatcaaaattgtgtatt 6829327  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 1348678 - 1348632
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattg 64  Q
    ||||||| |||||||||||| |||||| ||||||||||| |||||||    
T  1348678 ttttctaatagattagtaaaattatttaagatcaaaattttgtattg 1348632  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 18881245 - 18881204
Alignment:
Q  29 attagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    |||||||||||||||| ||||||||||||| ||||| |||||    
T  18881245 attagtaaagttatttaagatcaaaattgtatattgttatgt 18881204  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 31860606 - 31860647
Alignment:
Q  27 agattagtaaagttatttgagatcaaaattgtgtattgatat 68  Q
    ||||||||||| |||||| ||||||||||||| |||||||||    
T  31860606 agattagtaaaattatttaagatcaaaattgtatattgatat 31860647  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 48336586 - 48336534
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| ||||||||||||||||||| |||| |||| |||| |||| |||||    
T  48336586 ttttctattagattagtaaagttatttaagataaaaactgtgcattggtatgt 48336534  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 47080782 - 47080820
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaatt 56  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  47080782 ttttctaatagattagtaaagttatttaagatcaaaatt 47080820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 27248744 - 27248703
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtg 59  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||    
T  27248744 ttttctaatagattagttaagttatttaagatcaaaattgtg 27248703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16120777 - 16120731
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattg 64  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||    
T  16120777 ttttctaatagattattaaagttatttaatatcaaaattgtgtattg 16120731  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8924637 - 8924592
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtatt 63  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||||    
T  8924637 ttttctaatagattattaaagatatttaagatcaaaattgtgtatt 8924592  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 2544009 - 2544053
Alignment:
Q  26 tagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    |||||| |||||||||||| ||||||||||| || ||||||||||    
T  2544009 tagattggtaaagttatttaagatcaaaattatgcattgatatgt 2544053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 33046133 - 33046081
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| ||||||||||||||||||| ||||| ||||| || |||| |||||    
T  33046133 ttttctaatagattagtaaagttatttaagatcgaaattatgcattggtatgt 33046081  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24108 - 24056
Alignment:
Q  18 ttttctagtagattagtaaagttatttgagatcaaaattgtgtattgatatgt 70  Q
    ||||||| ||||||||||||||||||| |||| |||| |||| |||| |||||    
T  24108 ttttctattagattagtaaagttatttaagataaaaactgtgcattggtatgt 24056  T

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