View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_high_19 (Length: 416)
Name: NF20625_high_19
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 38900050 - 38900431
Alignment:
| Q |
20 |
caaggctggttgttttagtggaagaagaactgtttaatttttctagactcaaatccatgtcctttgtggagtttttctgcgaggctttgcatcactatat |
119 |
Q |
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| T |
38900050 |
caaggctggttgttttagtggaagaagaactgtttaatttttctagactcaaatccatgtcctttgtggagtttttctgtgaggctttgcatcactatat |
38900149 |
T |
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| Q |
120 |
tgcagtttcagattcacttgttagtactctgtcgcgtagccataagatggagttagcccttatagagaaagaggttttggggaatagaatcttagacagt |
219 |
Q |
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| T |
38900150 |
tgcagtttcagattcacttgttagtactctgtcgcgtagccataagatggagttagcccttatagagaaagaggttttggggaatagaatcttagacagt |
38900249 |
T |
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| Q |
220 |
gtaagacagtttccttgtgaaaaagaggagagaatattgtgggaagaaagannnnnnnattcattgaaagggtataaacgtgttggaatgagtacatgta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900250 |
gtaagacagtttccttgtgaaaaagaggagagaatattgtgggaaggaagatttttttattcattgaaagggtataaacgtgttggaatgagtacatgta |
38900349 |
T |
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| Q |
320 |
atatttcacaggctaagttattggttagcttgtttggtaaagggtattgggtgcaatttgagaactgtaagttggctctgtg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900350 |
atatttcacaggctaagttattggttagcttgtttggtaaagggtattgggtgcaatttgagaactgtaagttggctctgtg |
38900431 |
T |
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