View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_high_23 (Length: 351)
Name: NF20625_high_23
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 37304477 - 37304670
Alignment:
| Q |
18 |
acatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttctcattttc |
117 |
Q |
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| T |
37304477 |
acatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttctcattttc |
37304576 |
T |
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| Q |
118 |
agttctaagtgaagtattctcatgcctctcctgttgagtctgcaaac-nnnnnnnnnnntataaatcattctaagtactcttcatttttcaacc |
210 |
Q |
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| T |
37304577 |
agttctaagtgaagtattctcatgcctctcctgttgagtctgcaaacaaaaaaaaaaaatataaatcattctaagtactcttcatttttcaacc |
37304670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 37304717 - 37304804
Alignment:
| Q |
257 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
344 |
Q |
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| T |
37304717 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
37304804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 16825269 - 16825182
Alignment:
| Q |
257 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
344 |
Q |
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| T |
16825269 |
ccttcatttgagtccttttgttttgaaaccaaaacttgacttgcaaaggctcaagccctaactctctgcttaactccttcctttgctt |
16825182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 16825504 - 16825423
Alignment:
| Q |
18 |
acatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagc |
99 |
Q |
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||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||| |
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| T |
16825504 |
acatttcacctatagctgttggaccaccacaattaggacatgaagcattgctaagagcttctctatacctcatgttatcagc |
16825423 |
T |
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