View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_high_25 (Length: 314)

Name: NF20625_high_25
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_high_25
NF20625_high_25
[»] chr7 (16 HSPs)
chr7 (158-295)||(24138597-24138734)
chr7 (1-112)||(24139093-24139204)
chr7 (178-272)||(24146369-24146460)
chr7 (1-65)||(29200969-29201033)
chr7 (1-65)||(22289350-22289414)
chr7 (1-59)||(16732048-16732106)
chr7 (1-59)||(17710182-17710240)
chr7 (1-58)||(30493624-30493681)
chr7 (1-65)||(16098599-16098663)
chr7 (2-65)||(44480909-44480972)
chr7 (1-65)||(3601761-3601825)
chr7 (1-52)||(30824508-30824559)
chr7 (5-67)||(1581723-1581785)
chr7 (1-51)||(17877521-17877571)
chr7 (5-58)||(9328620-9328673)
chr7 (75-111)||(27749743-27749779)
[»] chr3 (13 HSPs)
chr3 (1-65)||(42340291-42340355)
chr3 (1-65)||(27608917-27608981)
chr3 (1-65)||(34497386-34497450)
chr3 (1-65)||(53497141-53497205)
chr3 (6-65)||(647182-647241)
chr3 (1-59)||(24176885-24176943)
chr3 (1-65)||(55199620-55199684)
chr3 (1-51)||(19117734-19117784)
chr3 (1-59)||(46007414-46007472)
chr3 (1-59)||(11020194-11020252)
chr3 (1-59)||(31341739-31341801)
chr3 (1-65)||(2615592-2615656)
chr3 (1-53)||(27747699-27747751)
[»] chr1 (11 HSPs)
chr1 (1-69)||(48949738-48949806)
chr1 (1-65)||(5609448-5609512)
chr1 (1-65)||(44527362-44527426)
chr1 (1-67)||(4395265-4395331)
chr1 (1-66)||(44602860-44602925)
chr1 (1-65)||(2885332-2885396)
chr1 (1-65)||(51113424-51113488)
chr1 (6-65)||(21031258-21031317)
chr1 (1-59)||(52109568-52109626)
chr1 (1-65)||(25682760-25682824)
chr1 (1-57)||(36733813-36733869)
[»] chr5 (14 HSPs)
chr5 (1-65)||(4268208-4268272)
chr5 (1-65)||(30222852-30222916)
chr5 (1-65)||(20205064-20205128)
chr5 (1-65)||(26597471-26597535)
chr5 (1-65)||(8388195-8388259)
chr5 (1-65)||(12660425-12660489)
chr5 (1-65)||(25730917-25730981)
chr5 (1-64)||(15988763-15988826)
chr5 (8-55)||(11375534-11375581)
chr5 (1-65)||(27292543-27292607)
chr5 (1-65)||(41940751-41940815)
chr5 (1-39)||(27532920-27532958)
chr5 (1-59)||(34652268-34652326)
chr5 (5-58)||(22767275-22767328)
[»] chr6 (11 HSPs)
chr6 (1-66)||(28107247-28107312)
chr6 (1-65)||(29368070-29368134)
chr6 (4-65)||(15053192-15053253)
chr6 (1-65)||(15606008-15606072)
chr6 (6-65)||(19690898-19690957)
chr6 (1-64)||(34104479-34104542)
chr6 (3-53)||(11731685-11731735)
chr6 (1-63)||(30802005-30802067)
chr6 (68-100)||(26631300-26631332)
chr6 (68-100)||(26737275-26737307)
chr6 (1-65)||(27443040-27443103)
[»] chr8 (12 HSPs)
chr8 (1-57)||(23854049-23854105)
chr8 (1-67)||(33642778-33642844)
chr8 (1-65)||(185605-185669)
chr8 (1-61)||(598251-598311)
chr8 (1-59)||(478070-478128)
chr8 (1-65)||(8451137-8451201)
chr8 (1-65)||(11870373-11870437)
chr8 (1-60)||(7127337-7127396)
chr8 (1-59)||(13415138-13415196)
chr8 (1-59)||(40588744-40588802)
chr8 (1-53)||(3606753-3606805)
chr8 (67-111)||(4860125-4860169)
[»] chr4 (13 HSPs)
chr4 (1-65)||(43840320-43840384)
chr4 (1-65)||(37245866-37245930)
chr4 (1-59)||(41835325-41835383)
chr4 (1-59)||(55735124-55735182)
chr4 (1-65)||(2064962-2065026)
chr4 (1-65)||(28537801-28537865)
chr4 (1-65)||(51259543-51259607)
chr4 (1-60)||(29655680-29655739)
chr4 (5-65)||(32577066-32577126)
chr4 (1-65)||(21321636-21321702)
chr4 (6-65)||(24989952-24990011)
chr4 (1-59)||(51734986-51735044)
chr4 (5-58)||(26422620-26422673)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-65)||(278-342)
[»] chr2 (11 HSPs)
chr2 (1-65)||(88668-88732)
chr2 (1-61)||(14827193-14827253)
chr2 (1-65)||(26198791-26198855)
chr2 (1-65)||(34695918-34695982)
chr2 (1-65)||(34718330-34718394)
chr2 (1-59)||(22845651-22845709)
chr2 (1-65)||(12130652-12130716)
chr2 (68-111)||(20283470-20283513)
chr2 (1-59)||(13109883-13109941)
chr2 (1-65)||(1417995-1418059)
chr2 (75-111)||(25740395-25740431)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-65)||(44258-44321)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 24138734 - 24138597
Alignment:
Q  158 ccaggttttttacctgatcgggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttattacaggttatctgactgtgttct 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24138734 ccaggttttttacctgatcgggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttgttacaggttatctgactgtgttct 24138635  T
Q  258 gagattcttaccatgactggacaagttgacaaagtaac 295  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24138634 gagattcttaccatgactggacaagttgacaaagtaac 24138597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 24139204 - 24139093
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagttgaatttgtgggaactttaaaattggataaatgaa 100  Q
    ||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  24139204 aatagcataaaatttcaaatcaacatgacccggagacgacagagcttgcactagagtagctgagtcgaatttgtgggaactttaaaattggacaaatgaa 24139105  T
Q  101 tccctttaaaaa 112  Q
    ||||||||||||    
T  24139104 tccctttaaaaa 24139093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 24146460 - 24146369
Alignment:
Q  178 ggaaagggaaattaaacaagttataagtttatctgaaaattcctttaactttgttattacaggttatctgactgtgttctgagattcttaccatg 272  Q
    |||||| | |||||||||||||||||| |||||  ||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||    
T  24146460 ggaaagcgtaattaaacaagttataagcttatcaaaaaattcctttaaatttgttg---caggttatctgactgtgttctgagattcttaccatg 24146369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29200969 - 29201033
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  29200969 aatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagagtagctgagt 29201033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22289414 - 22289350
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  22289414 aatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagt 22289350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16732106 - 16732048
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||| ||||||| ||||||||||| |||||||| || |||||||||||||||||||    
T  16732106 aatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtag 16732048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17710240 - 17710182
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||| ||||||| ||||||||||| |||||||| || |||||||||||||||||||    
T  17710240 aatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtag 17710182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30493624 - 30493681
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagta 58  Q
    ||||||||| ||||| ||||||||||| |||| |||||| ||||||||||||||||||    
T  30493624 aatagcataaaattctgaatcaccatggcccgaagacgatagagcttgcactagagta 30493681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16098663 - 16098599
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||||||||| ||||||||||| |||||||||||  ||||||| |||||||||| |||||    
T  16098663 aatatcatagaattctgaatcaccatggcccggagacgatggagcttgtactagagtagatgagt 16098599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 44480972 - 44480909
Alignment:
Q  2 atagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||| ||||||||||||||||||||||||||||| |  | ||||| ||||||||| ||||    
T  44480972 atagcataaaattccgaatcaccatgacccggagacgataacgtttgcagtagagtagcggagt 44480909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3601825 - 3601761
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| |||||||||||  || ||||||| | ||||||||||||||||| |||||    
T  3601825 aatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagagtagatgagt 3601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30824508 - 30824559
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcact 52  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||||    
T  30824508 aataacatagaattctgaatcaccatgacccagagacgatagagcatgcact 30824559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 1581785 - 1581723
Alignment:
Q  5 gcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagttg 67  Q
    |||||||||| ||||||||||||  |||||||||| |||| ||||| ||| |||| |||||||    
T  1581785 gcatagaatttcgaatcaccatggtccggagacgatagagtttgcattagtgtagatgagttg 1581723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17877571 - 17877521
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcac 51  Q
    |||||||||||||| ||||||||||||||||  | |||| |||||||||||    
T  17877571 aatagcatagaattacgaatcaccatgacccataaacgatagagcttgcac 17877521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 9328620 - 9328673
Alignment:
Q  5 gcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagta 58  Q
    ||||||||||| |||| |||||| ||||  ||||| ||||||||||||||||||    
T  9328620 gcatagaattctgaattaccatgtcccgctgacgatagagcttgcactagagta 9328673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 27749743 - 27749779
Alignment:
Q  75 gggaactttaaaattggataaatgaatccctttaaaa 111  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27749743 gggaactttaaaattggataaatgaaacccttcaaaa 27749779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42340291 - 42340355
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  42340291 aatagcatagaattctgaatcaccatggcccggagacgacagagcttgcactaaagtagctgagt 42340355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27608917 - 27608981
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  27608917 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagt 27608981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34497386 - 34497450
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  34497386 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagt 34497450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 53497205 - 53497141
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||    
T  53497205 aatagcatagaattccgaatcaccatggcccggagacgatagagcttgcacaagagtagatgagt 53497141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 647182 - 647241
Alignment:
Q  6 catagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  647182 catagaattccgaatcaccatggcccggagacgatagagcttgcactagagtagatgagt 647241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24176943 - 24176885
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  24176943 aatagcttagaattccgaatcaccatgacccagagacgatagagcttgcactagagtag 24176885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 55199684 - 55199620
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| |||||||||||||||||||||| |||||| || |||||||| |||||||||||||    
T  55199684 aatagcataaaattccgaatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagt 55199620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19117734 - 19117784
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcac 51  Q
    ||||||||| ||||||||||||||||| ||||||||||| || ||||||||    
T  19117734 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcac 19117784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46007472 - 46007414
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||||| ||||||||||| ||||| ||||||||||| | || ||||||||||||||    
T  46007472 aatagcataaaattccgaatcgccatggcccggagacgatatagtttgcactagagtag 46007414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11020194 - 11020252
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||| ||||||| ||||||||||| ||||||||||| ||| ||| |||| ||||||    
T  11020194 aatagcacagaattctgaatcaccatggcccggagacgatagaccttacactggagtag 11020252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31341739 - 31341801
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagac----gacagagcttgcactagagtag 59  Q
    ||||| ||| ||||| |||||||||||||||||||||    || |||||||||||||||||||    
T  31341739 aatagtataaaattctgaatcaccatgacccggagacgtaggatagagcttgcactagagtag 31341801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2615656 - 2615592
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||||||||| ||||||||||| | |  |||||| |||||| |||||||||||| |||||    
T  2615656 aatatcatagaattctgaatcaccatggcacaaagacgatagagctcgcactagagtagttgagt 2615592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27747699 - 27747751
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcacta 53  Q
    ||||||||||||||  ||||||||||| ||||||||||| | ||| |||||||    
T  27747699 aatagcatagaattttgaatcaccatggcccggagacgataaagcctgcacta 27747751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 48949738 - 48949806
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagttgaa 69  Q
    ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  48949738 aatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaa 48949806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5609512 - 5609448
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||| |||||    
T  5609512 aatagcatagaattctgaatcaccatgaccctgagacgatagagtttgcactagagtagatgagt 5609448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 44527426 - 44527362
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| |||||    
T  44527426 aatagcatagaattccgaatcaccatggcccggagatgatagagcttgcacaagagtagatgagt 44527362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4395331 - 4395265
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagttg 67  Q
    ||||| ||||||||| ||||||||||||||  ||||||| ||||||||||||||||||| |||||||    
T  4395331 aataggatagaattctgaatcaccatgaccttgagacgatagagcttgcactagagtagatgagttg 4395265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44602925 - 44602860
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagtt 66  Q
    ||||||||||||||  ||||||||||| |||||||| || |||||||||||||||||||| |||||    
T  44602925 aatagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagagtagcggagtt 44602860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2885396 - 2885332
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| || |||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  2885396 aatagcatataactccgaatcaccatagcccgaagacgatagagcttgcactagagtagctgagt 2885332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51113488 - 51113424
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| || |||||||||||||| ||| ||||||| || ||||||||||||||||||||||    
T  51113488 aatagcataaaactccgaatcaccatggcccagagacgatagcgcttgcactagagtagctgagt 51113424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 21031317 - 21031258
Alignment:
Q  6 catagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| ||||||||||||||||   |||||||||| ||||||||||||||| |||||||||    
T  21031317 cataaaattccgaatcaccatagtccggagacgatagagcttgcactagaatagctgagt 21031258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52109626 - 52109568
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||| ||||||||||||||||||||||  |||||||| | |||||||| ||||||||||    
T  52109626 aataacatagaattccgaatcaccatggtccggagacaatagagcttgtactagagtag 52109568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25682824 - 25682760
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||| |||||||||  ||||||  || ||||||||||| |||||||| ||||||||||||||||    
T  25682824 aatagtatagaattctaaatcactgtggcccggagacgatagagcttgtactagagtagctgagt 25682760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36733869 - 36733813
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagt 57  Q
    |||| |||||||||  |||||| |||| ||||||||||| | |||||||||||||||    
T  36733869 aataacatagaattatgaatcatcatggcccggagacgatatagcttgcactagagt 36733813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4268272 - 4268208
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||    
T  4268272 aatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagagtagatgagt 4268208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30222852 - 30222916
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||    
T  30222852 aatagcatagaattccgaatcaccgtgacccgaagacgatagcgcttgcactagagtagctgagt 30222916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20205128 - 20205064
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||  |||||||||||||||||||| || ||||||||||||||||||| |||||    
T  20205128 aatagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagagtagatgagt 20205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26597471 - 26597535
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  26597471 aataacataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagt 26597535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8388259 - 8388195
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||| || |||||||| || ||||||||||||||||||||||    
T  8388259 aatagcataaaattctgaatcaccatggcctggagacgatagcgcttgcactagagtagctgagt 8388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12660489 - 12660425
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||||||||| |||||||| || |||| |||||| |||||||||||||||||||||||||    
T  12660489 aatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactagagtagctgagt 12660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25730981 - 25730917
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| ||||||||||  |||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  25730981 aataacatagaattcttaatcaccatgaccctgagacgatagagcttgcactagagtagatgagt 25730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15988763 - 15988826
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgag 64  Q
    |||| |||||||||||||||||||||| || | |||||| |||| |||||||||||||||||||    
T  15988763 aataacatagaattccgaatcaccatggcctgaagacgatagagattgcactagagtagctgag 15988826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 11375534 - 11375581
Alignment:
Q  8 tagaattccgaatcaccatgacccggagacgacagagcttgcactaga 55  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  11375534 tagaattccgaatcaccatggaccggagacgatagagcttgcactaga 11375581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27292607 - 27292543
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| |||||| |||||||||| || |||||||| |||| ||||||||||| || |||||    
T  27292607 aatagcataaaattccaaatcaccatggcctggagacgatagagtttgcactagagcagatgagt 27292543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41940751 - 41940815
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||| |||  || ||||||| |||| |||||||||||||| |||||    
T  41940751 aatagcatagaattctgaatcacaatggtccagagacgatagagtttgcactagagtagttgagt 41940815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27532920 - 27532958
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacga 39  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  27532920 aatagcaaagaattctgaatcaccatgacccggagacga 27532958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34652268 - 34652326
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||| |||| ||||| ||||||||||| ||| ||||||  |||||||||||||||||||    
T  34652268 aataacatataattctgaatcaccatggcccagagacggtagagcttgcactagagtag 34652326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 22767275 - 22767328
Alignment:
Q  5 gcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagta 58  Q
    ||||||||||| |||| |||||| ||||  ||||| ||||||||||||||||||    
T  22767275 gcatagaattctgaattaccatgtcccgctgacgatagagcttgcactagagta 22767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28107312 - 28107247
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagtt 66  Q
    |||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  28107312 aataacatagaattctgaatcaccatggcccggagacgatagagcttgcactagagtagcggagtt 28107247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29368070 - 29368134
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| |||||    
T  29368070 aatagcatagaattacgaatcactatgacccggagacgatagagcttgcactatagtagatgagt 29368134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 15053192 - 15053253
Alignment:
Q  4 agcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||||||||||||| |||| |||||| || | ||||||||||||||||||||    
T  15053192 agcatagaattccgaatcaccatggcccgaagacgatagcgtttgcactagagtagctgagt 15053253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15606008 - 15606072
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||  ||| ||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  15606008 aatagcatagtgttctgaatcaccatgacctagagacgatagagcttgcactagagtagctgagt 15606072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 19690898 - 19690957
Alignment:
Q  6 catagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||| |||||||||||| | ||||||| ||||||||||||| |||||||||||    
T  19690898 catagaattccaaatcaccatgactcagagacgatagagcttgcactaaagtagctgagt 19690957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34104479 - 34104542
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgag 64  Q
    ||||||||| ||||| |||||||||||  |||||||||| || |||||||||||||||||||||    
T  34104479 aatagcataaaattctgaatcaccatggtccggagacgatagcgcttgcactagagtagctgag 34104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 11731685 - 11731735
Alignment:
Q  3 tagcatagaattccgaatcaccatgacccggagacgacagagcttgcacta 53  Q
    |||||||||| |||||| ||||||| ||||||||| | |||||||||||||    
T  11731685 tagcatagaactccgaaccaccatggcccggagacaatagagcttgcacta 11731735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30802005 - 30802067
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctga 63  Q
    |||| ||||||||||| | |||||||| | |||| |||| ||||||||||||| |||||||||    
T  30802005 aataacatagaattccaagtcaccatggctcggaaacgatagagcttgcactaaagtagctga 30802067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 26631300 - 26631332
Alignment:
Q  68 aatttgtgggaactttaaaattggataaatgaa 100  Q
    |||||| ||||||||||||||||||||||||||    
T  26631300 aatttgggggaactttaaaattggataaatgaa 26631332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 26737275 - 26737307
Alignment:
Q  68 aatttgtgggaactttaaaattggataaatgaa 100  Q
    |||||| ||||||||||||||||||||||||||    
T  26737275 aatttgggggaactttaaaattggataaatgaa 26737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27443103 - 27443040
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||| ||  ||||||| || ||| ||||||||||||||||||    
T  27443103 aatagcataaaattctgaatcaccatggcctagagacgatagcgct-gcactagagtagctgagt 27443040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23854105 - 23854049
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagt 57  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  23854105 aatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagagt 23854049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33642778 - 33642844
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagttg 67  Q
    |||| ||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  33642778 aatatcattgaattctgaatcaccatggcccggagacgacagagcttgcattagagtagatgagttg 33642844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 185605 - 185669
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||| |||||| ||||    
T  185605 aatagcatagaattctgaatcaccatggtccggagacgaaagagcttgcactaaagtagcagagt 185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 598251 - 598311
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagct 61  Q
    |||||||||||| | ||||||||||||||| | |||||| |||||||||||||||||||||    
T  598251 aatagcatagaacttcgaatcaccatgacctgaagacgatagagcttgcactagagtagct 598311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 478070 - 478128
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||| |||| ||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  478070 aatatcataaaataccgaatcaccataacccggagacgatagagcttgcactagagtag 478128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8451137 - 8451201
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||| |||||||||||||||||||| |||||||| | ||||||||||| ||||| |||||    
T  8451137 aataacataaaattccgaatcaccatgacctggagacgataaagcttgcactaaagtagatgagt 8451201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11870437 - 11870373
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||| |||||||||||||| | | ||||| | ||||||||||| |||||||||||||    
T  11870437 aatagcatagaaatccgaatcaccatggctccgagacaatagagcttgcacaagagtagctgagt 11870373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7127396 - 7127337
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagc 60  Q
    |||| |||||||| |  |||||||||| ||||||||||| ||||||||||||| ||||||    
T  7127396 aataacatagaatactaaatcaccatggcccggagacgaaagagcttgcactaaagtagc 7127337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13415196 - 13415138
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||||| ||||| ||||||||||| ||||| ||||| | | |||||||||||||||    
T  13415196 aatagcataaaattcagaatcaccatggcccggggacgatataccttgcactagagtag 13415138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40588744 - 40588802
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||||||||||| |||||| |||| ||||| ||||| |||| || |||||||||||    
T  40588744 aatagcatagaattcagaatcatcatggcccggggacgatagagtttacactagagtag 40588802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3606753 - 3606805
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcacta 53  Q
    |||||||||||||||| | |||||||||||| ||||||| |||| ||| ||||    
T  3606753 aatagcatagaattccaagtcaccatgaccctgagacgatagagtttgtacta 3606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 4860125 - 4860169
Alignment:
Q  67 gaatttgtgggaactttaaaattggataaatgaatccctttaaaa 111  Q
    ||||||| |||||||||||||||||| ||||||| ||||| ||||    
T  4860125 gaatttgggggaactttaaaattggacaaatgaagcccttcaaaa 4860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43840320 - 43840384
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||||||||||||||||  ||| |||||| |||||||||| ||||||||||||||    
T  43840320 aatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagagtagctgagt 43840384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37245866 - 37245930
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||| |||||| ||||    
T  37245866 aatagcatagaattctgaatcaccatggcccagagacgaaagagcttgcactaaagtagcagagt 37245930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41835325 - 41835383
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||||    
T  41835325 aatagcataggattccgaatcaccatggcccggagacgatagcgtttgcactagagtag 41835383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 55735182 - 55735124
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    ||||||||||||||| |||||||||||  ||| |||||| |||||||||||||||||||    
T  55735182 aatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtag 55735124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2065026 - 2064962
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||||||||  ||||||||| |||||    
T  2065026 aatagcatataatttcgaatcaccatgacctggagacgatagagcttgggctagagtagatgagt 2064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28537801 - 28537865
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||  ||||||||||| ||| ||||||| ||||||||||||| ||||| |||||    
T  28537801 aatagcatagaattttgaatcaccatggcccagagacgatagagcttgcactaaagtagatgagt 28537865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51259543 - 51259607
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||| |||| ||||| ||||||||||| |||| |||||| || ||||||||||||||||||||||    
T  51259543 aataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagagtagctgagt 51259607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29655680 - 29655739
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagc 60  Q
    |||| |||||||||| ||||||||||| |||| ||| || ||||||||||||||||||||    
T  29655680 aataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactagagtagc 29655739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 32577066 - 32577126
Alignment:
Q  5 gcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||| ||||||||||| ||||  |||||  ||||||||||||||||||| ||||    
T  32577066 gcatagaattctgaatcaccatgtcccgctgacgattgagcttgcactagagtagcagagt 32577126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21321702 - 21321636
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagc--ttgcactagagtagctgagt 65  Q
    |||| |||||||||| ||||||||||||||| ||||| | |||||  |||||||||||||| |||||    
T  21321702 aataacatagaattctgaatcaccatgaccctgagacaatagagcaattgcactagagtagatgagt 21321636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 24989952 - 24990011
Alignment:
Q  6 catagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||  |||||||| || ||| ||||||  |||||||||||||||||||||||||    
T  24989952 catagaattttgaatcaccgtggcccagagacggtagagcttgcactagagtagctgagt 24990011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51734986 - 51735044
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||| |||||||||  |||||||||||  || ||||||| |||||||||||||||||||    
T  51734986 aatatcatagaattatgaatcaccatggtccagagacgatagagcttgcactagagtag 51735044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 26422620 - 26422673
Alignment:
Q  5 gcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagta 58  Q
    ||||||||||| ||||||| ||| ||||  ||||| ||||||||||||||||||    
T  26422620 gcatagaattctgaatcactatgtcccgctgacgatagagcttgcactagagta 26422673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 278 - 342
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| |||| ||||||||| ||||| || ||||||||||||||||||| |||||    
T  278 aatagcatagaattctgaattaccatgacctggagatgatagagcttgcactagagtagatgagt 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 88732 - 88668
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| |||||||||||| |  ||||||| ||||||||||||||||||| |||||    
T  88732 aatagcatagaattctgaatcaccatgatcttgagacgatagagcttgcactagagtagatgagt 88668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14827253 - 14827193
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagct 61  Q
    |||||||||||||| ||||||||||||||||  | |||| |||||||||||||||||||||    
T  14827253 aatagcatagaatttcgaatcaccatgacccaaacacgatagagcttgcactagagtagct 14827193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26198855 - 26198791
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    |||||||||||||| | | |||||||||||  ||||||| |||||||||||||||||||||||||    
T  26198855 aatagcatagaatttcaattcaccatgacctagagacgatagagcttgcactagagtagctgagt 26198791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34695918 - 34695982
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  34695918 aatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagt 34695982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34718330 - 34718394
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  34718330 aatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagt 34718394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22845709 - 22845651
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||||| |||||||| |||||||||||| | |||||||| |||||||||||||||||||    
T  22845709 aatagcctagaattctgaatcaccatgatctggagacgatagagcttgcactagagtag 22845651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12130652 - 12130716
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||| |||| ||| || |||||||| |||||||||| |||||    
T  12130652 aatagcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagt 12130716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 20283513 - 20283470
Alignment:
Q  68 aatttgtgggaactttaaaattggataaatgaatccctttaaaa 111  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||    
T  20283513 aatttgggggaactttaaaattggacaaatgaagccctttaaaa 20283470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13109883 - 13109941
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtag 59  Q
    |||||| || |||||| |||||||||| |||| |||||| ||||||| |||||||||||    
T  13109883 aatagcttataattccaaatcaccatggcccgaagacgatagagcttccactagagtag 13109941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1417995 - 1418059
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||||||||| ||||||||||   || ||||| | |||||||| |||||||||| |||||    
T  1417995 aatagcatagaattctgaatcaccatagtccagagacaatagagcttgaactagagtagatgagt 1418059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 25740431 - 25740395
Alignment:
Q  75 gggaactttaaaattggataaatgaatccctttaaaa 111  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  25740431 gggaactttaaaattggacaaatgaagccctttaaaa 25740395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44258 - 44321
Alignment:
Q  1 aatagcatagaattccgaatcaccatgacccggagacgacagagcttgcactagagtagctgagt 65  Q
    ||||||||| ||||| ||||||||||| ||  ||||||| || || |||||||||||||||||||    
T  44258 aatagcataaaattctgaatcaccatggcctagagacgatagcgc-tgcactagagtagctgagt 44321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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