View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20625_high_3 (Length: 609)
Name: NF20625_high_3
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 348 - 597
Target Start/End: Complemental strand, 6486616 - 6486367
Alignment:
| Q |
348 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
|
| Q |
448 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
|
| Q |
548 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtc |
6486367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 6486830 - 6486678
Alignment:
| Q |
135 |
acaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcag |
234 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486830 |
acaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgactatgccatgcgtagcag |
6486731 |
T |
|
| Q |
235 |
cagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486730 |
cagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 6486949 - 6486867
Alignment:
| Q |
20 |
tgaatcggtgaaagagtaacaaacaaacaaaca----tcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486949 |
tgaatcggtgaaagagtaacaaacaaacaaacaaacatcttgaatgatagtgagataagagagaaaagaggacatcatgtttg |
6486867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University