View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_high_31 (Length: 287)

Name: NF20625_high_31
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_high_31
NF20625_high_31
[»] chr3 (1 HSPs)
chr3 (7-287)||(55303639-55303919)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 55303919 - 55303639
Alignment:
Q  7 tccaataaaattcatataatatgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattga 106  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303919 tccaataaatttcatataatacgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattga 55303820  T
Q  107 gtctgaaattgtatgattagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303819 gtctgaaattgtatgattagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgatt 55303720  T
Q  207 ggattggttgtagccttgattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccacttta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303719 ggattggttgtagccttgattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccacttta 55303639  T

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