View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_high_47 (Length: 215)

Name: NF20625_high_47
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_high_47
NF20625_high_47
[»] chr3 (10 HSPs)
chr3 (20-199)||(13479512-13479691)
chr3 (92-155)||(989402-989465)
chr3 (98-154)||(4142117-4142173)
chr3 (98-157)||(2459287-2459346)
chr3 (92-142)||(803213-803263)
chr3 (82-148)||(1940568-1940634)
chr3 (98-144)||(4157937-4157983)
chr3 (98-151)||(2644348-2644401)
chr3 (98-151)||(2659138-2659191)
chr3 (92-145)||(3754606-3754659)
[»] chr4 (3 HSPs)
chr4 (23-155)||(20019754-20019883)
chr4 (96-155)||(20016167-20016226)
chr4 (92-159)||(22672105-22672172)
[»] chr2 (1 HSPs)
chr2 (40-154)||(20537975-20538086)
[»] chr5 (2 HSPs)
chr5 (98-146)||(23766853-23766901)
chr5 (98-146)||(23816701-23816749)
[»] chr1 (2 HSPs)
chr1 (94-157)||(25609357-25609420)
chr1 (85-154)||(51381438-51381507)
[»] scaffold0044 (1 HSPs)
scaffold0044 (85-137)||(89142-89194)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 13479512 - 13479691
Alignment:
Q  20 gtagatgtgtacaacttgagcttgagtgtgttaagagattgtttgagcatatttgctggtcatcatgatatctgggtcatgaaagaatatggaattcaag 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13479512 gtagatgtgtgcaacttgagcttgagtgtgttaagagattgtttgagcatatttgctggtcatcatgatatctgggtcatgaaagaatatggaattcaag 13479611  T
Q  120 agtcttggacaaaattgttcactatttctaacatgccatctcctaatagttctgttagttttaccaaggctgcatatatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13479612 agtcttggacaaaattgttcactatttctaacatgccatctcctaatagttctgttagttttaccaaggctgcatatatt 13479691  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 989402 - 989465
Alignment:
Q  92 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatgc 155  Q
    ||||| |||||||| || |||| | ||||||||||||| |||||||||||||||||| ||||||    
T  989402 tgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgc 989465  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 4142173 - 4142117
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 154  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||||| || |||||    
T  4142173 atgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 2459287 - 2459346
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatgcca 157  Q
    ||||| |||||||||| | |||||||||||||||||||||| ||  ||||| ||||||||    
T  2459287 atgaaggaatatggaaataaagagtcttggacaaaattgtttaccgtttcttacatgcca 2459346  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 803263 - 803213
Alignment:
Q  92 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcact 142  Q
    ||||| |||||||||||||||| | ||||||||||||| || |||||||||    
T  803263 tgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 1940634 - 1940568
Alignment:
Q  82 tcatgatatctgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttct 148  Q
    ||||||| | ||||| ||||| ||| |||||| |||||| || ||||| ||||||||||||||||||    
T  1940634 tcatgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttct 1940568  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 4157983 - 4157937
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactat 144  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||||    
T  4157983 atgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2644401 - 2644348
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaac 151  Q
    ||||| || ||||||| ||||||||||||||| ||||||| ||||||| |||||    
T  2644401 atgaaggagtatggaaatcaagagtcttggactaaattgtacactattcctaac 2644348  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2659191 - 2659138
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaac 151  Q
    ||||| || ||||||| ||||||||||||||| ||||||| ||||||| |||||    
T  2659191 atgaaggagtatggaaatcaagagtcttggactaaattgtacactattcctaac 2659138  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 3754606 - 3754659
Alignment:
Q  92 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatt 145  Q
    ||||| ||||| |||||||||| | ||||||||||||| |||||||| ||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactatt 3754659  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 20019883 - 20019754
Alignment:
Q  23 gatgtgtacaacttgagcttgagtgtgttaagagattgtttgagcatatttgctggtcatcatgatatctgggtcatgaaagaatatggaattcaagagt 122  Q
    ||||||| |||||||| |||| |||||||||||||||  ||| ||||| || ||||| || ||| |   ||||||||||| |||||||||||||||||||    
T  20019883 gatgtgtccaacttgaccttgggtgtgttaagagatttcttgtgcataatttctggtaatgatgtt---tgggtcatgaaggaatatggaattcaagagt 20019787  T
Q  123 cttggacaaaattgttcactatttctaacatgc 155  Q
    ||||||| |||||||||||| ||||||||||||    
T  20019786 cttggactaaattgttcactctttctaacatgc 20019754  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 20016226 - 20016167
Alignment:
Q  96 tcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatgc 155  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  20016226 tcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgc 20016167  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 22672172 - 22672105
Alignment:
Q  92 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatgccatc 159  Q
    ||||| ||||| |||||||||| | | || |||||||| |||||||||||||||||| ||||||||||    
T  22672172 tgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatgccatc 22672105  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 20537975 - 20538086
Alignment:
Q  40 cttgagtgtgttaagagattgtttgagcatatttgctggtcatcatgatatctgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttc 139  Q
    ||||||||||||||||||||||||| ||||| || | ||||||   ||||| ||||||||||| |||||||||||| |||| |||||||| |||||||||    
T  20537975 cttgagtgtgttaagagattgtttgtgcataatttcgggtcat---gatatatgggtcatgaatgaatatggaatttaagaatcttggactaaattgttc 20538071  T
Q  140 actatttctaacatg 154  Q
    ||| |||||||||||    
T  20538072 actgtttctaacatg 20538086  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 23766901 - 23766853
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactattt 146  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  23766901 atgaaagaatatggaaataaagagtcttggactaaattgttcactattt 23766853  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 23816749 - 23816701
Alignment:
Q  98 atgaaagaatatggaattcaagagtcttggacaaaattgttcactattt 146  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  23816749 atgaaagaatatggaaataaagagtcttggactaaattgttcactattt 23816701  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 25609420 - 25609357
Alignment:
Q  94 ggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatgcca 157  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||  | |||||||| |||||    
T  25609420 ggtcatgaaggaatatgaaattcaagagtcttggactaaattgttcgttgtttctaacttgcca 25609357  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  85 tgatatctgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 154  Q
    |||||| ||| | |||||||||||||||| | ||||||||||||| |||||||||| |||| || |||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 89142 - 89194
Alignment:
Q  85 tgatatctgggtcatgaaagaatatggaattcaagagtcttggacaaaattgt 137  Q
    |||||| ||||| ||||| |||||||||| | ||||||||||||| |||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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