View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_high_48 (Length: 213)
Name: NF20625_high_48
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_48 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 20032 - 19926
Alignment:
| Q |
18 |
atgatgtattcaaagtaatcaatcacaacaagaataagaaacttaggaatcattaggtagacaacattatcataatcattatatttgattttaatctctc |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20032 |
atgatctattcaaagtaatcaatcacaacaagaataagaaacttaggaatcattaggtagacaacattatcataatcattatatttgattttaatctctc |
19933 |
T |
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| Q |
118 |
aagcaac |
124 |
Q |
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||||||| |
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| T |
19932 |
aagcaac |
19926 |
T |
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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 24979699 - 24979799
Alignment:
| Q |
18 |
atgatgtattcaaagtaatcaatcacaacaagaataagaaacttaggaatcattaggtagacaacattatcataatcattatatttgattttaatctctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24979699 |
atgatgtattcaaagtaatcaatcacaacaagaataagaaactta------attaggtagaaaacattatcataatcattatatttgattttaatctctc |
24979792 |
T |
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| Q |
118 |
aagcaac |
124 |
Q |
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||||||| |
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| T |
24979793 |
aagcaac |
24979799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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