View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_high_49 (Length: 213)
Name: NF20625_high_49
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 17813564 - 17813741
Alignment:
| Q |
18 |
ataaagattgttaattaaacatatcacttttcaagtaagaaaaaacatgttaaaataattattacctctgagttggatgaccttataaattaaagttgct |
117 |
Q |
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| T |
17813564 |
ataaagatcgttaattaaacatatcacttttcaagtaagaaaaaacacgttaaaataattattacctctgagttggatgaccttataa------gttgct |
17813657 |
T |
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| Q |
118 |
cttgcaaaacatcatagcaaaattgttgtccttaacacctgtgttccactcttttaggagagttggtttcattccaagtataat |
201 |
Q |
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| T |
17813658 |
cttgcaaaacatcatagcaaaatcgttgtccttaacacctgtgttccactcttttaggagagttggtttcattccaaatataat |
17813741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 12003486 - 12003380
Alignment:
| Q |
24 |
attgttaattaaacatatcacttttcaagtaagaaaaaacatgttaaaataattattacctctgagttggatgaccttataaattaaagttgctcttgca |
123 |
Q |
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| T |
12003486 |
attgttagttaaacatatcacttttcaagtaagaaaaaacatgtt-aaattattattacctctgagttggatgacctt-----ctaaagttgctcttgca |
12003393 |
T |
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| Q |
124 |
aaacatcatagca |
136 |
Q |
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| T |
12003392 |
aagcatcatagca |
12003380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 12002105 - 12002059
Alignment:
| Q |
153 |
cacctgtgttccactcttttaggagagttggtttcattccaagtata |
199 |
Q |
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| T |
12002105 |
cacctgtggtccactcttttaggagaggtggtttcattccaaatata |
12002059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 9418095 - 9418177
Alignment:
| Q |
24 |
attgttaattaaacatatcacttttcaagtaagaaaaaacatgttaaaataattattacctctgagttggatgaccttataaa |
106 |
Q |
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| T |
9418095 |
attgttagttaaacatgtcacttttcaattaagaaaaaacatgttaaaattattattacctctgagttggatgaccttctaaa |
9418177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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